assume I/O bound instead of CPU #192
Workflow file for this run
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name: Planemo | |
on: [push, pull_request] | |
env: | |
GALAXY_BRANCH: release_24.1 | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
planemo_test: | |
name: Planemo test | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
chunk: [1, 2, 3] | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
miniconda-version: "latest" | |
auto-activate-base: true | |
python-version: "3.12" | |
- name: get samtools | |
run: | | |
conda install -c conda-forge -c bioconda samtools | |
- name: pip install | |
run: | | |
pip install .[actions] | |
- name: planemo | |
run: | | |
./.planemo.sh ${{ matrix.chunk }} ${{ env.GALAXY_BRANCH }} | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: 'Tool test output ${{ matrix.chunk }}' | |
path: upload | |
planemo_combine_outputs: | |
name: Combine chunked test results | |
needs: planemo_test | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/download-artifact@v4 | |
with: | |
path: artifacts | |
- name: Combine outputs | |
uses: galaxyproject/planemo-ci-action@v1 | |
id: combine | |
with: | |
mode: combine | |
html-report: true | |
- uses: actions/upload-artifact@v4 | |
with: | |
name: 'All tool test results' | |
path: upload | |
- name: Check outputs | |
uses: galaxyproject/planemo-ci-action@v1 | |
id: check | |
with: | |
mode: check |