Refactor:Remove the read_atom_species and add read_lattice_constant (#…

…5828)

* modify cheack_tau

* change the cheak_tau

* modify the read_atom_species

* upadte the file

* fix unittest bug

* add objs

* modify the atom_label and atom_mass

* modify compile bug

* modify the reszie of the atom_mass

* fix compile bug

* [pre-commit.ci lite] apply automatic fixes

* Revert "fix compile bug"

This reverts commit 9a51ca3.

* Revert "modify the reszie of the atom_mass"

This reverts commit f9cc2b9.

* update the resize

* fix unitest bug

* change the compile bug

---------

Co-authored-by: pre-commit-ci-lite[bot] <117423508+pre-commit-ci-lite[bot]@users.noreply.github.com>

source/Makefile.Objects

@@ -189,6 +189,8 @@ OBJS_CELL=atom_pseudo.o\
     check_atomic_stru.o\
     update_cell.o\
     bcast_cell.o\
+    read_stru.o\
+    read_atom_species.o\
 
 OBJS_DEEPKS=LCAO_deepks.o\
         deepks_force.o\

source/module_cell/CMakeLists.txt

@@ -25,6 +25,8 @@ add_library(
     check_atomic_stru.cpp
     update_cell.cpp
     bcast_cell.cpp
+    read_stru.cpp
+    read_atom_species.cpp
 )
 
 if(ENABLE_COVERAGE)

source/module_cell/module_neighbor/test/prepare_unitcell.h

@@ -76,16 +76,12 @@ class UcellTestPrepare
 				this->lmaxmax,
 				this->init_vel,
 				this->fixed_axes);
-		delete[] ucell->atom_label;
-		delete[] ucell->atom_mass;
-		delete[] ucell->pseudo_fn;
-		delete[] ucell->pseudo_type;
 
 		delete[] ucell->magnet.start_magnetization; //mag set here
-		ucell->atom_label = new std::string[ucell->ntype];
-		ucell->atom_mass = new double[ucell->ntype];
-		ucell->pseudo_fn = new std::string[ucell->ntype];
-		ucell->pseudo_type = new std::string[ucell->ntype];
+		ucell->atom_label.resize(ucell->ntype);
+		ucell->atom_mass.resize(ucell->ntype);
+		ucell->pseudo_fn.resize(ucell->ntype);
+		ucell->pseudo_type.resize(ucell->ntype);
 		ucell->orbital_fn.resize(ucell->ntype);
 		ucell->magnet.start_magnetization = new double[ucell->ntype]; //mag set here
 		ucell->magnet.ux_[0] = 0.0; // ux_ set here