Refactor to allow ruff to identify bare excepts

Replaced `except Exception` and `except BaseException` with just `except`. All are functionally equivalent, but ruff sadly only picks up on bare `except`, so this change was necessary to allow these occurrences to be identified by ruff in the future.
Unfortunately, `except Exception as e` is still not picked up by ruff.

tools/RAiDER/cli/statsPlot.py

@@ -647,7 +647,7 @@ def _binned_vario(self, hEff, rawVario, xBin=None):
                     warnings.filterwarnings('ignore', message='Mean of empty slice')
                     hExp.append(np.nanmean(hEff[iBinMask]))
                     expVario.append(np.nanmean(rawVario[iBinMask]))
-            except BaseException:  # TODO: Which error(s)?
+            except:  # TODO: Which error(s)?
                 pass
 
         if False in ~np.isnan(hExp):
@@ -1391,7 +1391,7 @@ def _reader(self):
             data = pd.read_csv(self.fname, parse_dates=['Datetime'])
             data['Date'] = data['Datetime'].apply(lambda x: x.date())
             data['Date'] = data['Date'].apply(lambda x: dt.datetime.strptime(x.strftime('%Y-%m-%d'), '%Y-%m-%d'))
-        except BaseException:
+        except:
             data = pd.read_csv(self.fname, parse_dates=['Date'])
 
         # check if user-specified key is valid
@@ -1511,7 +1511,7 @@ def create_DF(self) -> None:
         if self.bbox is not None:
             try:
                 self.bbox = [float(val) for val in self.bbox.split()]
-            except BaseException:
+            except:
                 raise Exception(
                     'Cannot understand the --bounding_box argument. String input is incorrect or path does not exist.'
                 )

tools/RAiDER/getStationDelays.py

@@ -100,7 +100,7 @@ def get_delays_UNR(stationFile, filename, dateList, returnTime=None) -> None:
                     trotot, trototSD, trwet, tgetot, tgetotSD, tgntot, tgntotSD, wvapor, wvaporSD, mtemp = (
                         float(t) for t in split_lines[2:]
                     )
-                except BaseException:  # TODO: What error(s)?
+                except:  # TODO: What error(s)?
                     continue
                 site = split_lines[0]
                 year, doy, seconds = (int(n) for n in split_lines[1].split(':'))

tools/RAiDER/gnss/processDelayFiles.py

@@ -38,8 +38,8 @@ def combineDelayFiles(outName, loc=os.getcwd(), source='model', ext='.csv', ref=
     print(f'Combining {source} delay files')
     try:
         concatDelayFiles(files, sort_list=['ID', 'Datetime'], outName=outName, source=source)
-    except BaseException:
         concatDelayFiles(files, sort_list=['ID', 'Date'], outName=outName, source=source, ref=ref, col_name=col_name)
+    except:
 
 
 def addDateTimeToFiles(fileList, force=False, verbose=False) -> None:

tools/RAiDER/losreader.py

@@ -250,7 +250,7 @@ def getLookVectors(self, ht, llh, xyz, yy):
                     )
                     sat_xyz, _ = self._orbit.interpolate(aztime)
                     los[ii, jj, :] = (sat_xyz - inp_xyz) / slant_range
-                except Exception:
+                except:
                     los[ii, jj, :] = np.nan
         return los
 
@@ -356,10 +356,10 @@ def filter_ESA_orbit_file_p(path: str) -> bool:
             for orb_path in los_files:
                 svs.extend(read_ESA_Orbit_file(orb_path))
 
-        except BaseException:
+        except:
             try:
                 svs = read_shelve(los_file)
-            except BaseException:
+            except:
                 raise ValueError(f'get_sv: I cannot parse the statevector file {los_file}')
     except:
         raise ValueError(f'get_sv: I cannot parse the statevector file {los_file}')

tools/RAiDER/models/ecmwf.py

@@ -198,7 +198,7 @@ def _get_from_cds(self, lat_min, lat_max, lon_min, lon_max, acqTime, outname) ->
 
         try:
             c.retrieve('reanalysis-era5-complete', dataDict, outname)
-        except Exception:
+        except:
             raise Exception
 
     def _download_ecmwf(self, lat_min, lat_max, lat_step, lon_min, lon_max, lon_step, time, out) -> None:

tools/RAiDER/models/gmao.py

@@ -137,7 +137,7 @@ def _fetch(self, out) -> None:
         try:
             # Note that lat/lon gets written twice for GMAO because they are the same as y/x
             writeWeatherVarsXarray(lats, lons, h, q, p, t, dt, crs, outName=None, NoDataValue=None, chunk=(1, 91, 144))
-        except Exception:
+        except:
             logger.exception('Unable to save weathermodel to file')
 
     def load_weather(self, f=None) -> None:

tools/RAiDER/models/ncmr.py

@@ -195,7 +195,7 @@ def _download_ncmr_file(self, out, date_time, bounding_box) -> None:
 
         try:
             writeWeatherVarsXarray(lats, lons, hgt, q, p, t, self._time, self._proj, outName=out)
-        except Exception:
+        except:
             logger.exception('Unable to save weathermodel to file')
 
     def _makeDataCubes(self, filename) -> None:

tools/RAiDER/models/weatherModel.py

@@ -585,7 +585,7 @@ def _uniform_in_z(self, _zlevels=None) -> None:
         if _zlevels is None:
             try:
                 _zlevels = self._zlevels
-            except BaseException:
+            except:
                 _zlevels = np.nanmean(self._zs, axis=(0, 1))
 
         new_zs = np.tile(_zlevels, (nx, ny, 1))

tools/RAiDER/processWM.py

@@ -163,5 +163,5 @@ def _weather_model_debug(los, lats, lons, ll_bounds, weather_model, wmLoc, time,
         )
         try:
             weather_model.write2NETCDF4(weather_model_file)
-        except Exception:
+        except:
             logger.exception('Unable to save weathermodel to file')