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Add Miniscope-DAQ-V4 and CaImAn trigger #13

Merged
merged 73 commits into from
Apr 29, 2022
Merged

Add Miniscope-DAQ-V4 and CaImAn trigger #13

merged 73 commits into from
Apr 29, 2022

Commits on May 15, 2021

  1. remove 2p terms and adapt with inscopix miniscope

    @shenshan
    shenshan committed May 15, 2021
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Commits on May 17, 2021

  1. remove planes; preliminary separation of motion correction and segmen… 

    …tation
    @shenshan
    shenshan committed May 17, 2021
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  2. Fix typos

    @shenshan
    shenshan committed May 17, 2021
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  3. Update element_miniscope/miniscope.py 

    Co-authored-by: Kabilar Gunalan <[email protected]>
    @shenshan @kabilar
    shenshan and kabilar authored May 17, 2021
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Commits on May 18, 2021

  1. Change a few table definitions and remove scan

    @shenshan
    shenshan committed May 18, 2021
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  2. Merge branch 'dev' of https://github.com/shenshan/element-miniscope i… 

    …nto dev
    @shenshan
    shenshan committed May 18, 2021
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Commits on May 19, 2021

  1. Delete CaImAn loader

    @kabilar
    kabilar committed May 19, 2021
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Commits on May 21, 2021

  1. Update element_miniscope/miniscope.py 

    Co-authored-by: Kabilar Gunalan <[email protected]>
    @shenshan @kabilar
    shenshan and kabilar authored May 21, 2021
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  2. Update element_miniscope/miniscope.py 

    Co-authored-by: Kabilar Gunalan <[email protected]>
    @shenshan @kabilar
    shenshan and kabilar authored May 21, 2021
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  3. Update element_miniscope/miniscope.py 

    Co-authored-by: Kabilar Gunalan <[email protected]>
    @shenshan @kabilar
    shenshan and kabilar authored May 21, 2021
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  4. add back non-rigid motion correction

    @shenshan
    shenshan committed May 21, 2021
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  5. Merge branch 'dev' of https://github.com/shenshan/element-miniscope i… 

    …nto dev
    @shenshan
    shenshan committed May 21, 2021
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  6. Roi extraction -> segmentation

    @shenshan
    shenshan committed May 21, 2021
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Commits on Jul 23, 2021

  1. remove scan module

    @shenshan
    shenshan committed Jul 23, 2021
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Commits on Jul 27, 2021

  1. Merge branch 'dev' of https://github.com/shenshan/element-miniscope i… 

    …nto main
    @kabilar
    kabilar committed Jul 27, 2021
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Commits on Sep 27, 2021

  1. Merge pull request datajoint#7 from shenshan/dev 

    remove 2p terms and adapt with inscopix miniscope
    @kabilar
    kabilar authored Sep 27, 2021
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  2. Update version

    @kabilar
    kabilar committed Sep 27, 2021
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  3. Move loader to element_data_loader

    @kabilar
    kabilar committed Sep 27, 2021
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  4. Remove directory

    @kabilar
    kabilar committed Sep 27, 2021
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  5. Move loader to element_data_loader

    @kabilar
    kabilar committed Sep 27, 2021
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  6. Clean up requirements

    @kabilar
    kabilar committed Sep 27, 2021
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  7. Add timestamps & minor fixes

    @kabilar
    kabilar committed Sep 27, 2021
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  8. Merge branch 'dev' of https://github.com/datajoint/element-miniscope … 

    …into main
    @kabilar
    kabilar committed Sep 27, 2021
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Commits on Oct 5, 2021

  1. Move populate routine from workflow to element

    @kabilar
    kabilar committed Oct 5, 2021
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  2. Minor requirements update

    @kabilar
    kabilar committed Oct 5, 2021
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Commits on Oct 18, 2021

  1. Add support for Miniscope DAQ V4

    @kabilar
    kabilar committed Oct 18, 2021
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Commits on Oct 26, 2021

  1. Refactor to handle both V3 and V4 files

    @kabilar
    kabilar committed Oct 26, 2021
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Commits on Mar 23, 2022

  1. Update license

    @kabilar
    kabilar committed Mar 23, 2022
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  2. Update package name

    @kabilar
    kabilar committed Mar 23, 2022
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  3. Add files for pypi release

    @kabilar
    kabilar committed Mar 23, 2022
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  4. Add issue templates

    @kabilar
    kabilar committed Mar 23, 2022
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  5. Merge branch 'main' into main

    @kabilar
    kabilar authored Mar 23, 2022
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  6. Remove MiniscopeAnalysis

    @kabilar
    kabilar committed Mar 23, 2022
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  7. Merge branch 'main' of https://github.com/kabilar/element-miniscope i… 

    …nto main
    @kabilar
    kabilar committed Mar 23, 2022
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Commits on Apr 15, 2022

  1. Move background to elements.datajoint.org

    @kabilar
    kabilar committed Apr 15, 2022
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  2. Add collapsible section

    @kabilar
    kabilar committed Apr 15, 2022
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Commits on Apr 16, 2022

  1. Add citation section

    @kabilar
    kabilar committed Apr 16, 2022
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Commits on Apr 17, 2022

  1. Add links to elements.datajoint.org

    @kabilar
    kabilar committed Apr 17, 2022
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Commits on Apr 18, 2022

  1. Update format

    @kabilar
    kabilar committed Apr 18, 2022
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Commits on Apr 24, 2022

  1. Revert separation of processing steps

    @kabilar
    kabilar committed Apr 24, 2022
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  2. Add processing and curation tables

    @kabilar
    kabilar committed Apr 24, 2022
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  3. Add directory functions

    @kabilar
    kabilar committed Apr 24, 2022
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  4. Update version

    @kabilar
    kabilar committed Apr 24, 2022
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  5. Update setup.py

    @kabilar
    kabilar committed Apr 24, 2022
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  6. Fix RecordingInfo for Miniscope-DAQ-V4

    @kabilar
    kabilar committed Apr 24, 2022
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  7. Update comments

    @kabilar
    kabilar committed Apr 24, 2022
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  8. Add CaImAn triggering

    @kabilar
    kabilar committed Apr 24, 2022
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Commits on Apr 25, 2022

  1. Handle case of database conenction timeout

    @kabilar
    kabilar committed Apr 25, 2022
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  2. Remove z dimension and multiple fields

    @kabilar
    kabilar committed Apr 25, 2022
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  3. Minor update to Segmentation. Add MaskType.

    @kabilar
    kabilar committed Apr 25, 2022
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  4. Minor Fluorescence update

    @kabilar
    kabilar committed Apr 25, 2022
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Commits on Apr 26, 2022

  1. Remove processing_task_id attribute

    @kabilar
    kabilar committed Apr 26, 2022
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  2. Minor update to Activity table

    @kabilar
    kabilar committed Apr 26, 2022
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  3. Add comment

    @kabilar
    kabilar committed Apr 26, 2022
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  4. Add changelog

    @kabilar
    kabilar committed Apr 26, 2022
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  5. Update README

    @kabilar
    kabilar committed Apr 26, 2022
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  6. Add AnatomicalLocation table

    @kabilar
    kabilar committed Apr 26, 2022
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  7. Update diagram

    @kabilar
    kabilar committed Apr 26, 2022
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Commits on Apr 27, 2022

  1. Fix foreign key references

    @kabilar
    kabilar committed Apr 27, 2022
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  2. Update element_miniscope/miniscope.py 

    Co-authored-by: Chris Brozdowski <[email protected]>
    @kabilar @CBroz1
    kabilar and CBroz1 authored Apr 27, 2022
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  3. Update to be nullable

    @kabilar
    kabilar committed Apr 27, 2022
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  4. Update element_miniscope/miniscope.py 

    Co-authored-by: Chris Brozdowski <[email protected]>
    @kabilar @CBroz1
    kabilar and CBroz1 authored Apr 27, 2022
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  5. Update diagram

    @kabilar
    kabilar committed Apr 27, 2022
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  6. Merge branch 'main' of https://github.com/kabilar/element-miniscope

    @kabilar
    kabilar committed Apr 27, 2022
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Commits on Apr 29, 2022

  1. Update element_miniscope/miniscope.py 

    Co-authored-by: Chris Brozdowski <[email protected]>
    @kabilar @CBroz1
    kabilar and CBroz1 authored Apr 29, 2022
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  2. Update element_miniscope/miniscope.py 

    Co-authored-by: Thinh Nguyen <[email protected]>
    @kabilar
    kabilar and Thinh Nguyen authored Apr 29, 2022
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  3. Update element_miniscope/miniscope.py 

    Co-authored-by: Thinh Nguyen <[email protected]>
    @kabilar
    kabilar and Thinh Nguyen authored Apr 29, 2022
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  4. Update element_miniscope/miniscope.py 

    Co-authored-by: Thinh Nguyen <[email protected]>
    @kabilar
    kabilar and Thinh Nguyen authored Apr 29, 2022
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  5. Update element_miniscope/miniscope.py 

    Co-authored-by: Thinh Nguyen <[email protected]>
    @kabilar
    kabilar and Thinh Nguyen authored Apr 29, 2022
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  6. Update element_miniscope/miniscope.py 

    Co-authored-by: Thinh Nguyen <[email protected]>
    @kabilar
    kabilar and Thinh Nguyen authored Apr 29, 2022
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  7. Update element_miniscope/miniscope.py 

    Co-authored-by: Thinh Nguyen <[email protected]>
    @kabilar
    kabilar and Thinh Nguyen authored Apr 29, 2022
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  8. Update element_miniscope/miniscope.py 

    Co-authored-by: Thinh Nguyen <[email protected]>
    @kabilar
    kabilar and Thinh Nguyen authored Apr 29, 2022
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  9. Update element_miniscope/miniscope.py 

    Co-authored-by: Chris Brozdowski <[email protected]>
    @kabilar @CBroz1
    kabilar and CBroz1 authored Apr 29, 2022
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