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^CohortSurvival\.Rproj$ | ||
^\.Rproj\.user$ | ||
^README\.Rmd$ | ||
^LICENSE\.md$ | ||
^\.github$ | ||
^_pkgdown\.yml$ | ||
^docs$ | ||
^pkgdown$ |
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*.html |
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [main, master] | ||
pull_request: | ||
branches: [main, master] | ||
release: | ||
types: [published] | ||
workflow_dispatch: | ||
|
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name: pkgdown | ||
|
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jobs: | ||
pkgdown: | ||
runs-on: ubuntu-latest | ||
# Only restrict concurrency for non-PR jobs | ||
concurrency: | ||
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
permissions: | ||
contents: write | ||
steps: | ||
- uses: actions/checkout@v3 | ||
|
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- uses: r-lib/actions/setup-pandoc@v2 | ||
|
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- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
use-public-rspm: true | ||
|
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- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::pkgdown, local::. | ||
needs: website | ||
|
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- name: Build site | ||
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | ||
shell: Rscript {0} | ||
|
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- name: Deploy to GitHub pages 🚀 | ||
if: github.event_name != 'pull_request' | ||
uses: JamesIves/[email protected] | ||
with: | ||
clean: false | ||
branch: gh-pages | ||
folder: docs |
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [main, develop] | ||
pull_request: | ||
branches: [main, develop] | ||
|
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name: R-CMD-check | ||
|
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jobs: | ||
R-CMD-check: | ||
runs-on: ubuntu-latest | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
R_KEEP_PKG_SOURCE: yes | ||
steps: | ||
- uses: actions/checkout@v3 | ||
|
||
- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
use-public-rspm: true | ||
|
||
- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::rcmdcheck | ||
needs: check | ||
|
||
- uses: r-lib/actions/check-r-package@v2 |
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.Rproj.user | ||
inst/doc | ||
docs |
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Version: 1.0 | ||
|
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RestoreWorkspace: No | ||
SaveWorkspace: No | ||
AlwaysSaveHistory: Default | ||
|
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EnableCodeIndexing: Yes | ||
UseSpacesForTab: Yes | ||
NumSpacesForTab: 2 | ||
Encoding: UTF-8 | ||
|
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RnwWeave: Sweave | ||
LaTeX: pdfLaTeX | ||
|
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AutoAppendNewline: Yes | ||
StripTrailingWhitespace: Yes | ||
LineEndingConversion: Posix | ||
|
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BuildType: Package | ||
PackageUseDevtools: Yes | ||
PackageInstallArgs: --no-multiarch --with-keep.source | ||
PackageRoxygenize: rd,collate,namespace |
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Package: CohortSurvival | ||
Title: What the Package Does (One Line, Title Case) | ||
Version: 0.0.0.9000 | ||
Authors@R: | ||
person("First", "Last", , "[email protected]", role = c("aut", "cre"), | ||
comment = c(ORCID = "YOUR-ORCID-ID")) | ||
Description: What the package does (one paragraph). | ||
License: Apache License (>= 2) | ||
Encoding: UTF-8 | ||
Roxygen: list(markdown = TRUE) | ||
RoxygenNote: 7.2.3 | ||
Imports: | ||
CDMConnector, | ||
checkmate, | ||
cli, | ||
DBI, | ||
dplyr, | ||
dbplyr, | ||
duckdb, | ||
magrittr, | ||
lubridate, | ||
PatientProfiles, | ||
rlang (>= 0.4.11), | ||
survival, | ||
tibble, | ||
tidyr, | ||
scales, | ||
stringr, | ||
methods | ||
Suggests: | ||
testthat (>= 3.0.0), | ||
CodelistGenerator, | ||
roxygen2, | ||
knitr, | ||
tictoc, | ||
rmarkdown, | ||
ggplot2 | ||
Config/testthat/edition: 3 | ||
VignetteBuilder: knitr | ||
URL: https://darwin-eu.github.io/CohortSurvival/ |
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Apache License | ||
============== | ||
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_Version 2.0, January 2004_ | ||
_<<http://www.apache.org/licenses/>>_ | ||
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### Terms and Conditions for use, reproduction, and distribution | ||
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# Generated by roxygen2: do not edit by hand | ||
|
||
export("%>%") | ||
export(":=") | ||
export(.data) | ||
export(addCohortSurvival) | ||
export(as_label) | ||
export(as_name) | ||
export(benchmarkCohortSurvival) | ||
export(enquo) | ||
export(enquos) | ||
export(estimateSingleEventSurvival) | ||
export(generateDeathCohortSet) | ||
export(mockMGUS2cdm) | ||
export(plotCumulativeIncidence) | ||
export(plotSurvival) | ||
export(summariseCharacteristics) | ||
export(survivalParticipants) | ||
importFrom(PatientProfiles,summariseCharacteristics) | ||
importFrom(magrittr,"%>%") | ||
importFrom(rlang,":=") | ||
importFrom(rlang,.data) | ||
importFrom(rlang,.env) | ||
importFrom(rlang,as_label) | ||
importFrom(rlang,as_name) | ||
importFrom(rlang,enquo) | ||
importFrom(rlang,enquos) |
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#' @keywords internal | ||
"_PACKAGE" | ||
|
||
## usethis namespace: start | ||
#' @importFrom rlang .data | ||
#' @importFrom rlang .env | ||
## usethis namespace: end | ||
NULL |
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