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Merge pull request #95 from darwin-eu/develop
v1.7.0
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,6 @@ | ||
| Package: CodelistGenerator | ||
| Title: Generate Code Lists for the OMOP Common Data Model | ||
| Version: 1.6.0 | ||
| Version: 1.7.0 | ||
| Authors@R: c( | ||
| person("Edward", "Burn", email = "[email protected]", | ||
| role = c("aut", "cre"), | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,88 @@ | ||
| { | ||
| "ConceptSets": [ | ||
| { | ||
| "id": 0, | ||
| "name": "acetaminophen", | ||
| "expression": { | ||
| "items": [ | ||
| { | ||
| "concept": { | ||
| "CONCEPT_CLASS_ID": "Ingredient", | ||
| "CONCEPT_CODE": "161", | ||
| "CONCEPT_ID": 1125315, | ||
| "CONCEPT_NAME": "acetaminophen", | ||
| "DOMAIN_ID": "Drug", | ||
| "INVALID_REASON": "V", | ||
| "INVALID_REASON_CAPTION": "Valid", | ||
| "STANDARD_CONCEPT": "S", | ||
| "STANDARD_CONCEPT_CAPTION": "Standard", | ||
| "VOCABULARY_ID": "RxNorm", | ||
| "VALID_START_DATE": "1970-01-01", | ||
| "VALID_END_DATE": "2099-12-31" | ||
| }, | ||
| "includeDescendants": true | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| { | ||
| "id": 1, | ||
| "name": "influenza", | ||
| "expression": { | ||
| "items": [ | ||
| { | ||
| "concept": { | ||
| "CONCEPT_CLASS_ID": "Clinical Finding", | ||
| "CONCEPT_CODE": "6142004", | ||
| "CONCEPT_ID": 4266367, | ||
| "CONCEPT_NAME": "Influenza", | ||
| "DOMAIN_ID": "Condition", | ||
| "INVALID_REASON": "V", | ||
| "INVALID_REASON_CAPTION": "Valid", | ||
| "STANDARD_CONCEPT": "S", | ||
| "STANDARD_CONCEPT_CAPTION": "Standard", | ||
| "VOCABULARY_ID": "SNOMED", | ||
| "VALID_START_DATE": "2002-01-31", | ||
| "VALID_END_DATE": "2099-12-31" | ||
| } | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| ], | ||
| "PrimaryCriteria": { | ||
| "CriteriaList": [ | ||
| { | ||
| "ConditionOccurrence": { | ||
| "CodesetId": 1 | ||
| } | ||
| }, | ||
| { | ||
| "DrugExposure": { | ||
| "CodesetId": 0 | ||
| } | ||
| } | ||
| ], | ||
| "ObservationWindow": { | ||
| "PriorDays": 0, | ||
| "PostDays": 0 | ||
| }, | ||
| "PrimaryCriteriaLimit": { | ||
| "Type": "First" | ||
| } | ||
| }, | ||
| "QualifiedLimit": { | ||
| "Type": "First" | ||
| }, | ||
| "ExpressionLimit": { | ||
| "Type": "First" | ||
| }, | ||
| "InclusionRules": [], | ||
| "CensoringCriteria": [], | ||
| "CollapseSettings": { | ||
| "CollapseType": "ERA", | ||
| "EraPad": 0 | ||
| }, | ||
| "CensorWindow": {}, | ||
| "cdmVersionRange": ">=5.0.0" | ||
| } |
Empty file.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,89 @@ | ||
| { | ||
| "ConceptSets": [ | ||
| { | ||
| "id": 0, | ||
| "name": "OA", | ||
| "expression": { | ||
| "items": [ | ||
| { | ||
| "concept": { | ||
| "CONCEPT_CLASS_ID": "Clinical Finding", | ||
| "CONCEPT_CODE": "396275006", | ||
| "CONCEPT_ID": 3, | ||
| "CONCEPT_NAME": "Osteoarthritis", | ||
| "DOMAIN_ID": "Condition", | ||
| "INVALID_REASON": "V", | ||
| "INVALID_REASON_CAPTION": "Valid", | ||
| "STANDARD_CONCEPT": "S", | ||
| "STANDARD_CONCEPT_CAPTION": "Standard", | ||
| "VOCABULARY_ID": "SNOMED" | ||
| }, | ||
| "includeDescendants": true | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| { | ||
| "id": 1, | ||
| "name": "Other", | ||
| "expression": { | ||
| "items": [ | ||
| { | ||
| "concept": { | ||
| "CONCEPT_CLASS_ID": "Clinical Finding", | ||
| "CONCEPT_CODE": "422504002", | ||
| "CONCEPT_ID": 5, | ||
| "CONCEPT_NAME": "Ischemic stroke", | ||
| "DOMAIN_ID": "Condition", | ||
| "INVALID_REASON": "V", | ||
| "INVALID_REASON_CAPTION": "Valid", | ||
| "STANDARD_CONCEPT": "S", | ||
| "STANDARD_CONCEPT_CAPTION": "Standard", | ||
| "VOCABULARY_ID": "SNOMED" | ||
| } | ||
| } | ||
| ] | ||
| } | ||
| } | ||
| ], | ||
| "PrimaryCriteria": { | ||
| "CriteriaList": [ | ||
| { | ||
| "ConditionOccurrence": { | ||
| "CodesetId": 0 | ||
| } | ||
| }, | ||
| { | ||
| "Observation": { | ||
| "CodesetId": 0 | ||
| } | ||
| }, | ||
| { | ||
| "ConditionOccurrence": { | ||
| "CodesetId": 1 | ||
| } | ||
| } | ||
| ], | ||
| "ObservationWindow": { | ||
| "PriorDays": 0, | ||
| "PostDays": 0 | ||
| }, | ||
| "PrimaryCriteriaLimit": { | ||
| "Type": "First" | ||
| } | ||
| }, | ||
| "QualifiedLimit": { | ||
| "Type": "First" | ||
| }, | ||
| "ExpressionLimit": { | ||
| "Type": "First" | ||
| }, | ||
| "InclusionRules": [], | ||
| "CensoringCriteria": [], | ||
| "CollapseSettings": { | ||
| "CollapseType": "ERA", | ||
| "EraPad": 0 | ||
| }, | ||
| "CensorWindow": {}, | ||
| "cdmVersionRange": ">=5.0.0" | ||
| } |
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