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If everything fails
Experience has shown that cleartool calls may fail arbitrarily. If repository and view get out of sync, just fix the affected directory by calling:
java -jar git-to-clearcase-1.2 --git c:\cmd\git\git.exe --repo c:\git\proj-repository --ct c:\cmd\clearcase\bin\cleartool.exe --view c:\ccviews\project\source --compare subdirectory