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Releases: cytoscape/py4cytoscape

0.0.11

12 Oct 00:29
f37a419
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  • Updated documentation and tutorials
    
  • Made set_*_property_bypass more resilient to null node/edge lists
    
  • For Notebook support, improved startup code and added notebook_show_image(), notebook_export_show_image() functions
    
  • For color generators, added reverse= parameter and made divergent palettes automatically reversed
    
  • Fixed filter and style bypass functions to not crash when there are no selected nodes
    

0.0.9

26 Jul 02:02
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  • Updated documentation and tutorials
  • Reworked iGraph support to track RCy3 implementation
  • Added iGraph support for Graph, DiGraph, MultiGraph, MultiDiGraph
  • Updated node/edge-to-suid functions to allow detection of multiple copies of a node/edge
  • Enabled delete_duplicate_edges to ignore edge direction
  • Added support for discrete and continuous value generators (as gen* functions in new style_auto_mappers module)

0.0.8

31 Mar 20:33
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  • Added parameters in CyNDEX functions to support subdomains
  • Added apply= parameter in filter definition functions to support Cytoscape v3.9.0 separating apply from definition
  • Added overwrite_file parameter to export functions
  • Added Sandbox direct download from URL
  • Added functions for import network from tabular file & get current style, etc
  • Fixes that allow commands_help to work

0.0.7

09 Jan 01:53
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  • Compatibility of node, edge and group parameter with RCy3 formats
  • Improved verify_supported_versions parsing for Cytoscape 3.10 and beyond

0.0.6

30 Oct 23:37
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  • Improved sandboxing and Jupyter Notebook documentation
  • Shortened execution delays
  • Docker support
  • More rational default directory for standalone Python execution

0.0.5

23 Oct 19:00
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  • Referenced Concepts:Sandboxing from documentation for sandbox functions
  • Updated installation and logging documentation
  • Updated test to detect Colab shell

0.0.4

06 Oct 21:09
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Includes everything in 0.0.3 (defective release):

  • Conform to Cytoscape Automation API Definition <https://docs.google.com/spreadsheets/d/1XLWsKxGLqcBWLzoW2y6HyAUU2jMXaEaWw7QLn3NE5nY/edit?usp=sharing>_
  • Change CyError logger to write exceptions to stderr
  • Add Sandboxing interface and functions
  • Add merge_network() and analyze_network()
  • Add Jupyter-bridge, Cytoscape Automation API, py4cytoscape versions to cytoscape_version_info
  • Add support for Jupyter-bridge
  • Add Concepts section to documentation

0.0.2

27 Aug 01:25
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Added commands.sub_version()