Merge remote-tracking branch 'origin/master'

cytoscape · Mar 31, 2021 · 24f882e · 24f882e
2 parents 8eae0e1 + 1886510
commit 24f882e
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 124 deletions.
diff --git a/doc/tutorials/Overview-of-py4cytoscape.ipynb b/doc/tutorials/Overview-of-py4cytoscape.ipynb
@@ -624,102 +624,15 @@
         "style_values | Retrieving current values for visual properties. | *get_node_width<br/> get_edge_color<br/> get_network_zoom*\n",
         "tables | Managing table columns and table column functions, like map and rename, as well as loading and extracting table data in Cytoscape. | *get_table_columns<br/> rename_table_column<br/> load_table_data<br/> map_table_column*\n",
         "tools | Performing actions found in the Tools Menu in Cytoscape. | *cybrowser_dialog<br/> diffusion_basic*\n",
-        "user_interface | Controling the panels in the Cytoscape user interface. | *hide_panel<br/> float_panel<br/> dock_panel*\n",
-        "\n",
-        "Open swagger docs for live instances of CyREST API and Commands API:\n",
-        "\n"
-      ]
-    },
-    {
-      "cell_type": "code",
-      "metadata": {
-        "id": "uq9Hc2VplUyp"
-      },
-      "source": [
-        "p4c.cyrest_api()"
-      ],
-      "execution_count": null,
-      "outputs": []
-    },
-    {
-      "cell_type": "code",
-      "metadata": {
-        "id": "O1IQY3KT8Kna"
-      },
-      "source": [
-        "p4c.commands_api()"
-      ],
-      "execution_count": null,
-      "outputs": []
-    },
-    {
-      "cell_type": "markdown",
-      "metadata": {
-        "id": "XBRPTtJ68lXN"
-      },
-      "source": [
-        "List available commands and arguments in Python. Use “help” to list top level:"
-      ]
-    },
-    {
-      "cell_type": "code",
-      "metadata": {
-        "id": "e_5BaI-z8aMW"
-      },
-      "source": [
-        "p4c.commands_help(\"help\")"
-      ],
-      "execution_count": null,
-      "outputs": []
-    },
-    {
-      "cell_type": "markdown",
-      "metadata": {
-        "id": "oQutmKH19qrj"
-      },
-      "source": [
-        "List **network** commands. Note that “help” is optional:"
-      ]
-    },
-    {
-      "cell_type": "code",
-      "metadata": {
-        "id": "CSTgyF_g8s20"
-      },
-      "source": [
-        "p4c.commands_help(\"help network\")"
-      ],
-      "execution_count": null,
-      "outputs": []
-    },
-    {
-      "cell_type": "markdown",
-      "metadata": {
-        "id": "E5aYBbvz91MY"
-      },
-      "source": [
-        "List arguments for the **network select** command:"
+        "user_interface | Controling the panels in the Cytoscape user interface. | *hide_panel<br/> float_panel<br/> dock_panel*\n"
       ]
     },
-    {
-      "cell_type": "code",
-      "metadata": {
-        "id": "HWEC_n9x9ml8"
-      },
-      "source": [
-        "p4c.commands_help(\"help network select\")"
-      ],
-      "execution_count": null,
-      "outputs": []
-    },
     {
       "cell_type": "markdown",
       "metadata": {
         "id": "sU3GXhKK-AXr"
       },
       "source": [
-        "That covers the basics of network manipulation. Check out the other vignettes for additional amd more complex examples. And when you are ready to work with some real data, check out the other basic and advanced R tutorials, https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/Python.\n",
-        "\n",
         "## More examples\n",
         "\n",
         "The Cytoscape team is collecting scripts from the community in a public GitHub repository at https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/Python.\n",
@@ -756,4 +669,4 @@
       "outputs": []
     }
   ]
-}
+}
diff --git a/doc/tutorials/Overview-of-py4cytoscape.rst b/doc/tutorials/Overview-of-py4cytoscape.rst
@@ -431,41 +431,6 @@ py4cytoscape functions
 |                       | interface.            | dock_panel*           |
 +-----------------------+-----------------------+-----------------------+
 
-Open swagger docs for live instances of CyREST API and Commands API:
-
-.. code:: python
-
-    p4c.cyrest_api()
-
-.. code:: python
-
-    p4c.commands_api()
-
-List available commands and arguments in Python. Use “help” to list top
-level:
-
-.. code:: python
-
-    p4c.commands_help("help")
-
-List **network** commands. Note that “help” is optional:
-
-.. code:: python
-
-    p4c.commands_help("help network")
-
-List arguments for the **network select** command:
-
-.. code:: python
-
-    p4c.commands_help("help network select")
-
-That covers the basics of network manipulation. Check out the other
-vignettes for additional amd more complex examples. And when you are
-ready to work with some real data, check out the other basic and
-advanced R tutorials,
-https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/Python.
-
 More examples
 -------------