Add description of inst/extdata/testdata files

ctlab · Oct 17, 2023 · 6a3ee45 · 6a3ee45
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: phantasusLite
 Type: Package
 Title: Loading and annotation RNA-Seq counts matrices 
-Version: 0.99.2
+Version: 0.99.3
 Authors@R: c(person("Rita", "Sablina", role = "aut"),        
              person("Maxim", "Kleverov", role = "aut"),        
              person("Alexey", "Sergushichev", email = "[email protected]", role = c("aut", "cre")))

diff --git a/inst/script/testdata.md b/inst/script/testdata.md
@@ -0,0 +1 @@
+`inst/extdata/testdata/gct` folder contains toy gene expression files in GCT format, generated for testing purposes. They are generated based on a small subset of GSE63040 and GSE53986 datasets. The initial versions of the files were obtained by exporting the corresponding datasets from Phantasus application. Additionally, files were manually modified to trigger certain code scenarios (e.g. by introducing duplicated IDs in `test_dup.gct`).
diff --git a/vignettes/phantasusLite-tutorial.Rmd b/vignettes/phantasusLite-tutorial.Rmd
@@ -68,7 +68,7 @@ url <- 'https://ctlab.itmo.ru/hsds/?domain=/counts'
 getHSDSFileList(url)
 ```
 
-GSE53053 dataset was sequenced from Arabidopsis thaliana and we can get an expression matrix 
+GSE53053 dataset was sequenced from *Mus musculus* and we can get an expression matrix 
 from the corresponding HDF5-file with DEE2 data:
 
 ```{r}