Skip to content

Feature/small genome db support 20231013 #297

Feature/small genome db support 20231013

Feature/small genome db support 20231013 #297

Triggered via pull request November 30, 2023 13:53
Status Success
Total duration 3m 17s
Artifacts
This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

singularity.yml

on: pull_request
Changed Singularity Recipes
5s
Changed Singularity Recipes
Matrix: build-test-containers
Fit to window
Zoom out
Zoom in

Annotations

42 warnings
Changed Singularity Recipes
The following actions uses node12 which is deprecated and will be forced to run on node16: jitterbit/get-changed-files@b17fbb00bdc0c0f63fcf166580804b4d2cdc2a42. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Changed Singularity Recipes
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Changed Singularity Recipes
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Changed Singularity Recipes
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Changed Singularity Recipes
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Changed Singularity Recipes
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Changed Singularity Recipes
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Changed Singularity Recipes
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Check gffquant/alignment/__init__.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/__init__.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/__main__.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/alignment/aln_group.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/alignment/cigarops.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/alignment/bamreader.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/bin/build_custom_database.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/counters/seq_counter.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/alignment/samflags.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/counters/alignment_counter.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/counters/count_manager.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/counters/region_counter.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/bin/build_domain_database.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/gene_database_importer.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/settings.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/custom_database_importer.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/gff_dbm.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/bin/db_collate.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/alignment/pysam_alignment_processor.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/annstr_db_importer.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/bin/build_bed_database.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/profilers/feature_quantifier.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/small_database_importer.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/database_importer.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/bin/build_gene_database.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/__init__.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/annotation_db.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/small_genome_database_importer.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/models/db.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/profilers/region_quantifier.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/profilers/gene_quantifier.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/__init__.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/db/importers/chunk_reader.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Check gffquant/handle_args.py
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-go@v1, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/