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Feature/small genome db support 20231013 #295

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Feature/small genome db support 20231013

Feature/small genome db support 20231013 #295

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Job Run time
Changed Singularity Recipes
2s
Check .gitignore
2s
Check gffquant/__init__.py
2m 3s
Check gffquant/__main__.py
1m 53s
Check gffquant/alignment/__init__.py
2m 0s
Check gffquant/alignment/aln_group.py
2m 4s
Check gffquant/alignment/bamreader.py
1m 55s
Check gffquant/alignment/cigarops.py
1m 59s
Check gffquant/alignment/pysam_alignment_processor.py
2m 13s
Check gffquant/alignment/samflags.py
2m 2s
Check gffquant/bin/build_bed_database.py
1m 56s
Check gffquant/bin/build_custom_database.py
1m 56s
Check gffquant/bin/build_domain_database.py
1m 54s
Check gffquant/bin/build_gene_database.py
2m 1s
Check gffquant/bin/db_collate.py
1m 50s
Check gffquant/counters/alignment_counter.py
1m 58s
Check gffquant/counters/count_manager.py
2m 15s
Check gffquant/counters/region_counter.py
1m 57s
Check gffquant/counters/seq_counter.py
1m 53s
Check gffquant/db/__init__.py
2m 3s
Check gffquant/db/annotation_db.py
1m 52s
Check gffquant/db/gff_dbm.py
1m 53s
Check gffquant/db/importers/__init__.py
2m 0s
Check gffquant/db/importers/annstr_db_importer.py
1m 53s
Check gffquant/db/importers/chunk_reader.py
1m 55s
Check gffquant/db/importers/custom_database_importer.py
1m 56s
Check gffquant/db/importers/database_importer.py
1m 59s
Check gffquant/db/importers/gene_database_importer.py
1m 52s
Check gffquant/db/importers/settings.py
1m 51s
Check gffquant/db/importers/small_database_importer.py
1m 50s
Check gffquant/db/importers/small_genome_database_importer.py
2m 2s
Check gffquant/db/models/db.py
1m 52s
Check gffquant/handle_args.py
1m 52s
Check gffquant/profilers/feature_quantifier.py
2m 0s
Check gffquant/profilers/gene_quantifier.py
1m 50s
Check gffquant/profilers/region_quantifier.py
1m 54s
1h 6m 27s