provrc: tool action resourceusage

crs4 · Oct 22, 2024 · ec81c0f · ec81c0f
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diff --git a/rocrate_validator/profiles/provenance-run-crate/may/1_tool_action.ttl b/rocrate_validator/profiles/provenance-run-crate/may/1_tool_action.ttl
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+# Copyright (c) 2024 CRS4
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+@prefix ro: <./> .
+@prefix ro-crate: <https://github.com/crs4/rocrate-validator/profiles/ro-crate/> .
+@prefix provenance-run-crate: <https://github.com/crs4/rocrate-validator/profiles/provenance-run-crate/> .
+@prefix schema: <http://schema.org/> .
+@prefix bioschemas: <https://bioschemas.org/> .
+@prefix sh: <http://www.w3.org/ns/shacl#> .
+@prefix wfrun: <https://w3id.org/ro/terms/workflow-run#> .
+
+provenance-run-crate:ProvRCToolActionOptional a sh:NodeShape ;
+    sh:name "Provenance Run Crate tool action MAY" ;
+    sh:description "Optional properties of a Provenance Run Crate action that represents a tool execution" ;
+    sh:target [
+        a sh:SPARQLTarget ;
+        sh:prefixes ro-crate:sparqlPrefixes ;
+        sh:select """
+            SELECT ?this
+            WHERE {
+                { ?this a schema:CreateAction } UNION
+                { ?this a schema:ActivateAction } UNION
+                { ?this a schema:UpdateAction } .
+                ?this schema:instrument ?tool .
+                { ?tool a schema:SoftwareApplication } UNION
+                { ?tool a schema:SoftwareSourceCode } UNION
+                { ?tool a bioschemas:ComputationalWorkflow } .
+                ?workflow schema:hasPart ?tool .
+                ?workflow a bioschemas:ComputationalWorkflow .
+            }
+        """
+    ] ;
+    sh:property [
+        a sh:PropertyShape ;
+        sh:name "Tool action resourceUsage" ;
+        sh:description "A tool action MAY have a resourceUsage" ;
+        sh:path wfrun:resourceUsage ;
+        sh:minCount 1 ;
+        sh:message "A tool action MAY have a resourceUsage" ;
+    ] .
diff --git a/rocrate_validator/profiles/provenance-run-crate/must/1_tool_action.ttl b/rocrate_validator/profiles/provenance-run-crate/must/1_tool_action.ttl
@@ -0,0 +1,51 @@
+# Copyright (c) 2024 CRS4
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+@prefix ro: <./> .
+@prefix ro-crate: <https://github.com/crs4/rocrate-validator/profiles/ro-crate/> .
+@prefix provenance-run-crate: <https://github.com/crs4/rocrate-validator/profiles/provenance-run-crate/> .
+@prefix schema: <http://schema.org/> .
+@prefix bioschemas: <https://bioschemas.org/> .
+@prefix sh: <http://www.w3.org/ns/shacl#> .
+@prefix wfrun: <https://w3id.org/ro/terms/workflow-run#> .
+
+provenance-run-crate:ProvRCToolActionRequired a sh:NodeShape ;
+    sh:name "Provenance Run Crate tool action MUST" ;
+    sh:description "Required properties of a Provenance Run Crate action that represents a tool execution" ;
+    sh:target [
+        a sh:SPARQLTarget ;
+        sh:prefixes ro-crate:sparqlPrefixes ;
+        sh:select """
+            SELECT ?this
+            WHERE {
+                { ?this a schema:CreateAction } UNION
+                { ?this a schema:ActivateAction } UNION
+                { ?this a schema:UpdateAction } .
+                ?this schema:instrument ?tool .
+                { ?tool a schema:SoftwareApplication } UNION
+                { ?tool a schema:SoftwareSourceCode } UNION
+                { ?tool a bioschemas:ComputationalWorkflow } .
+                ?workflow schema:hasPart ?tool .
+                ?workflow a bioschemas:ComputationalWorkflow .
+            }
+        """
+    ] ;
+    sh:property [
+        a sh:PropertyShape ;
+        sh:name "Tool action resourceUsage" ;
+        sh:description "If present, resourceUsage MUST point to PropertyValue" ;
+        sh:path wfrun:resourceUsage ;
+        sh:class schema:PropertyValue ;
+        sh:message "If present, resourceUsage MUST point to PropertyValue" ;
+    ] .