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cleanup, fix s1 numbering #70

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cleanup, fix s1 numbering #70

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c2eadee
[DATALAD] Recorded changes
bpinsard Nov 10, 2022
3a11307
[DATALAD] Recorded changes
bpinsard Nov 10, 2022
981fb91
fill IntendedFor
bpinsard Nov 10, 2022
73bd655
[DATALAD] removed content
bpinsard Sep 22, 2023
a28f26d
[DATALAD] removed content
bpinsard Sep 22, 2023
c688c81
[DATALAD] removed content
bpinsard Sep 22, 2023
686ca41
fix naming error
bpinsard Oct 31, 2023
ba015e5
fix scans.tsv for removed data
bpinsard Oct 31, 2023
c598180
trim end of scan to match other participants
bpinsard Oct 31, 2023
d5f252b
fix metadata, intendedFor
bpinsard Oct 31, 2023
d10aab0
remove the whole session, scan sync not working
bpinsard Oct 31, 2023
9cca3da
[DATALAD] removed content
bpinsard Oct 31, 2023
3251338
remove duplicate runs
bpinsard Oct 31, 2023
d127a25
dev/tbshoot
bpinsard Oct 31, 2023
5e23dcb
remove failed scans
bpinsard Oct 31, 2023
a8e69b0
remove failed scans
bpinsard Oct 31, 2023
af88d6a
rename to avoid collision
bpinsard Nov 1, 2023
35eca8d
merge with rest of the session
bpinsard Nov 1, 2023
4159cf8
Merge branch 'p06_friends042b' into maint/2022
bpinsard Nov 1, 2023
37fa6a6
the grand renumbering
bpinsard Nov 2, 2023
840e69a
udpate submodule
bpinsard Nov 3, 2023
3eca3e5
remove interrupted scan
bpinsard Nov 3, 2023
d68a79a
[DATALAD] removed content
bpinsard Jul 16, 2024
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2 changes: 1 addition & 1 deletion stimuli
Open in desktop
Submodule stimuli updated 15 files
+1 −1 s1/friends_s01e02.mkv
+1 −1 s1/friends_s01e02a.mkv
+1 −1 s1/friends_s01e02b.mkv
+1 −1 s1/friends_s01e03.mkv
+1 −1 s1/friends_s01e03a.mkv
+1 −1 s1/friends_s01e03b.mkv
+1 −1 s1/friends_s01e04.mkv
+1 −1 s1/friends_s01e04a.mkv
+1 −1 s1/friends_s01e04b.mkv
+1 −1 s1/friends_s01e05.mkv
+1 −1 s1/friends_s01e05a.mkv
+1 −1 s1/friends_s01e05b.mkv
+1 −1 s1/friends_s01e06.mkv
+1 −1 s1/friends_s01e06a.mkv
+1 −1 s1/friends_s01e06b.mkv
44 changes: 22 additions & 22 deletions sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.json
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2 changes: 1 addition & 1 deletion sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.nii.gz
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
../../../.git/annex/objects/1X/vV/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz
../../../.git/annex/objects/Mg/25/SHA256E-s518236862--22bbe4b35ccdb623bed7dd1bc3044891cb4092a41715ecd0e4f052db7b7adc82.nii.gz/SHA256E-s518236862--22bbe4b35ccdb623bed7dd1bc3044891cb4092a41715ecd0e4f052db7b7adc82.nii.gz
38 changes: 19 additions & 19 deletions sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.json
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
{
"AcquisitionMatrixPE": 104,
"AcquisitionNumber": 1,
"AcquisitionTime": "11:27:2.247500",
"AcquisitionTime": "11:00:43.490000",
"BandwidthPerPixelPhaseEncode": 17.17,
"BaseResolution": 104,
"BodyPartExamined": "BRAIN",
Expand Down Expand Up @@ -43,29 +43,29 @@
"PhaseResolution": 1,
"PixelBandwidth": 2290,
"ProcedureStepDescription": "video_friends",
"ProtocolName": "func_task-s01e02a",
"ProtocolName": "func_task-s01e01a",
"PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold",
"ReceiveCoilActiveElements": "HC1-7;NC1,2",
"ReceiveCoilName": "HeadNeck_64",
"ReconMatrixPE": 104,
"RepetitionTime": 1.49,
"SAR": 0.0383981,
"SAR": 0.0384014,
"ScanOptions": "FS",
"ScanningSequence": "EP",
"SequenceName": "epfid2d1_104",
"SequenceVariant": "SK_SS",
"SeriesDescription": "func_task-s01e02a_SBRef",
"SeriesNumber": 13,
"SeriesDescription": "func_task-s01e01a_SBRef",
"SeriesNumber": 9,
"ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22],
"SliceThickness": 2,
"SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78],
"SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.02, 4.1175, 4.215, 4.3125, 4.41, 4.51, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825],
"SoftwareVersions": "syngo_MR_E11",
"SpacingBetweenSlices": 2,
"StationName": "MRC35049",
"TaskName": "friends",
"TotalReadoutTime": 0.0576811,
"TxRefAmp": 246.432,
"WipMemBlock": "60f8628f-854d-4bd2-9886-7dc40e156a62||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja",
"WipMemBlock": "bf900d47-d7d9-4fc8-8a39-1992f522e2af||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja",
"dcmmeta_affine": [
[-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297],
[-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594],
Expand All @@ -85,13 +85,13 @@
"const": {
"AcquisitionMatrix": [104, 0, 0, 104],
"AcquisitionNumber": 1,
"AcquisitionTime": "112702.247500",
"AcquisitionTime": "110043.490000",
"AngioFlag": "N",
"BitsAllocated": 16,
"BitsStored": 16,
"BodyPartExamined": "BRAIN",
"Columns": 832,
"ContentTime": "112839.155000",
"ContentTime": "110159.226000",
"EchoNumbers": 1,
"EchoTime": 37.0,
"EchoTrainLength": 104,
Expand All @@ -107,11 +107,11 @@
"MOSAIC"
],
"ImagedNucleus": "1H",
"ImagingFrequency": 123.259145,
"ImagingFrequency": 123.259131,
"InPlanePhaseEncodingDirection": "COL",
"InstanceCreationTime": "112839.155000",
"InstanceCreationTime": "110159.226000",
"InstanceNumber": 1,
"LargestImagePixelValue": 57111,
"LargestImagePixelValue": 59821,
"MRAcquisitionType": "2D",
"MagneticFieldStrength": 3.0,
"Manufacturer": "SIEMENS",
Expand All @@ -126,10 +126,10 @@
"PixelBandwidth": 2290.0,
"PixelRepresentation": 0,
"PixelSpacing": [2.0, 2.0],
"ProtocolName": "func_task-s01e02a",
"ProtocolName": "func_task-s01e01a",
"RepetitionTime": 1490.0,
"Rows": 832,
"SAR": 0.03839806751426,
"SAR": 0.038401406525,
"SamplesPerPixel": 1,
"ScanOptions": "FS",
"ScanningSequence": "EP",
Expand All @@ -138,9 +138,9 @@
"SK",
"SS"
],
"SeriesDescription": "func_task-s01e02a_SBRef",
"SeriesNumber": 13,
"SeriesTime": "112839.152000",
"SeriesDescription": "func_task-s01e01a_SBRef",
"SeriesNumber": 9,
"SeriesTime": "110159.223000",
"SliceLocation": -34.499927506096,
"SliceThickness": 2.0,
"SmallestImagePixelValue": 0,
Expand All @@ -151,9 +151,9 @@
"StudyTime": "102747.562000",
"TransmitCoilName": "Body",
"VariableFlipAngleFlag": "N",
"WindowCenter": 12218.0,
"WindowCenter": 12402.0,
"WindowCenterWidthExplanation": "Algo1",
"WindowWidth": 25998.0,
"WindowWidth": 26499.0,
"dBdt": 0.0},
"slices": {}
}
Expand Down
2 changes: 1 addition & 1 deletion sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.nii.gz
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
../../../.git/annex/objects/F6/5Z/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz
../../../.git/annex/objects/ZQ/6g/SHA256E-s1102565--24451eb366f8441752c905f5b891fe8776b4bdaff57df90fc3d7bedfff0a3a4c.nii.gz/SHA256E-s1102565--24451eb366f8441752c905f5b891fe8776b4bdaff57df90fc3d7bedfff0a3a4c.nii.gz
44 changes: 22 additions & 22 deletions sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_bold.json
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Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_bold.nii.gz
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
../../../.git/annex/objects/QF/Qm/SHA256E-s508036190--de80ec18f11b400c272f1730cfdf0d8af56faf55d802537fab9a1a9541676af8.nii.gz/SHA256E-s508036190--de80ec18f11b400c272f1730cfdf0d8af56faf55d802537fab9a1a9541676af8.nii.gz
../../../.git/annex/objects/pm/9F/SHA256E-s518428527--cb74469908a490ad562eb820885006f2d1df88af8a7cf72702db921f9897436a.nii.gz/SHA256E-s518428527--cb74469908a490ad562eb820885006f2d1df88af8a7cf72702db921f9897436a.nii.gz
38 changes: 19 additions & 19 deletions sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.json
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
{
"AcquisitionMatrixPE": 104,
"AcquisitionNumber": 1,
"AcquisitionTime": "11:39:20.425000",
"AcquisitionTime": "11:14:0.090000",
"BandwidthPerPixelPhaseEncode": 17.17,
"BaseResolution": 104,
"BodyPartExamined": "BRAIN",
Expand Down Expand Up @@ -43,29 +43,29 @@
"PhaseResolution": 1,
"PixelBandwidth": 2290,
"ProcedureStepDescription": "video_friends",
"ProtocolName": "func_task-s01e02b",
"ProtocolName": "func_task-s01e01b",
"PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold",
"ReceiveCoilActiveElements": "HC1-7;NC1,2",
"ReceiveCoilName": "HeadNeck_64",
"ReconMatrixPE": 104,
"RepetitionTime": 1.49,
"SAR": 0.0383981,
"SAR": 0.0384014,
"ScanOptions": "FS",
"ScanningSequence": "EP",
"SequenceName": "epfid2d1_104",
"SequenceVariant": "SK_SS",
"SeriesDescription": "func_task-s01e02b_SBRef",
"SeriesNumber": 15,
"SeriesDescription": "func_task-s01e01b_SBRef",
"SeriesNumber": 11,
"ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22],
"SliceThickness": 2,
"SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.0775, 1.1775, 1.275, 1.3725, 1.47, 1.5675, 1.6675, 1.765, 1.8625, 1.96, 2.0575, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825],
"SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.5475, 2.6475, 2.745, 2.8425, 2.94, 3.0375, 3.1375, 3.235, 3.3325, 3.43, 3.5275, 3.6275, 3.725, 3.8225, 3.92, 4.0175, 4.1175, 4.215, 4.3125, 4.41, 4.5075, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825],
"SoftwareVersions": "syngo_MR_E11",
"SpacingBetweenSlices": 2,
"StationName": "MRC35049",
"TaskName": "friends",
"TotalReadoutTime": 0.0576811,
"TxRefAmp": 246.432,
"WipMemBlock": "e548b985-4114-4fe4-8b9e-64ec5d532c2e||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja",
"WipMemBlock": "b76d64f2-3cdf-4bf0-b5d9-11377e29a785||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja",
"dcmmeta_affine": [
[-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297],
[-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594],
Expand All @@ -85,13 +85,13 @@
"const": {
"AcquisitionMatrix": [104, 0, 0, 104],
"AcquisitionNumber": 1,
"AcquisitionTime": "113920.425000",
"AcquisitionTime": "111400.090000",
"AngioFlag": "N",
"BitsAllocated": 16,
"BitsStored": 16,
"BodyPartExamined": "BRAIN",
"Columns": 832,
"ContentTime": "114059.225000",
"ContentTime": "111539.296000",
"EchoNumbers": 1,
"EchoTime": 37.0,
"EchoTrainLength": 104,
Expand All @@ -107,11 +107,11 @@
"MOSAIC"
],
"ImagedNucleus": "1H",
"ImagingFrequency": 123.259151,
"ImagingFrequency": 123.259141,
"InPlanePhaseEncodingDirection": "COL",
"InstanceCreationTime": "114059.225000",
"InstanceCreationTime": "111539.296000",
"InstanceNumber": 1,
"LargestImagePixelValue": 58222,
"LargestImagePixelValue": 59540,
"MRAcquisitionType": "2D",
"MagneticFieldStrength": 3.0,
"Manufacturer": "SIEMENS",
Expand All @@ -126,10 +126,10 @@
"PixelBandwidth": 2290.0,
"PixelRepresentation": 0,
"PixelSpacing": [2.0, 2.0],
"ProtocolName": "func_task-s01e02b",
"ProtocolName": "func_task-s01e01b",
"RepetitionTime": 1490.0,
"Rows": 832,
"SAR": 0.03839806751426,
"SAR": 0.038401406525,
"SamplesPerPixel": 1,
"ScanOptions": "FS",
"ScanningSequence": "EP",
Expand All @@ -138,9 +138,9 @@
"SK",
"SS"
],
"SeriesDescription": "func_task-s01e02b_SBRef",
"SeriesNumber": 15,
"SeriesTime": "114059.222000",
"SeriesDescription": "func_task-s01e01b_SBRef",
"SeriesNumber": 11,
"SeriesTime": "111539.293000",
"SliceLocation": -34.499927506096,
"SliceThickness": 2.0,
"SmallestImagePixelValue": 0,
Expand All @@ -151,9 +151,9 @@
"StudyTime": "102747.562000",
"TransmitCoilName": "Body",
"VariableFlipAngleFlag": "N",
"WindowCenter": 12248.0,
"WindowCenter": 12315.0,
"WindowCenterWidthExplanation": "Algo1",
"WindowWidth": 26056.0,
"WindowWidth": 26248.0,
"dBdt": 0.0},
"slices": {}
}
Expand Down
2 changes: 1 addition & 1 deletion sub-01/ses-001/func/sub-01_ses-001_task-s01e02b_sbref.nii.gz
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
../../../.git/annex/objects/6W/Mv/SHA256E-s1103628--2880a3438fc3bc4d8fd21db6c2f7929351ef32efcbfa581cdb106bc11c81c63b.nii.gz/SHA256E-s1103628--2880a3438fc3bc4d8fd21db6c2f7929351ef32efcbfa581cdb106bc11c81c63b.nii.gz
../../../.git/annex/objects/XF/7Q/SHA256E-s1102889--cf64c02d283808d4a026407d09d03de6b71003cb5a610fdeea8a95d4139823d7.nii.gz/SHA256E-s1102889--cf64c02d283808d4a026407d09d03de6b71003cb5a610fdeea8a95d4139823d7.nii.gz
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