Implementation of body/genu/splenium labeled diffusion metrics.
Diffusion metrics (FA/MD/RD) processed using the TractoFlow nextflow pipeline (Arnaud Boré), as well as the T1-> diffusion space registration files. The MNI->T1 space registration files were taken from https://github.com/courtois-neuromod/anat.smriprep (Basile Pinsard).
Transformation of the JHU ICBM-DTI-81 White-Matter Labels (FSL/FSLeyes) from MNI to diffusion space:
antsApplyTransforms --input $LABEL --reference-image $REF_T1 --transform $T1_REG --output $LABEL_T1space --interpolation genericLabel --verbose 1
antsApplyTransforms --input $LABEL_T1space --reference-image $REF_METRIC --transform "[$DIFF_REG,0]" --output $LABEL_Diffspace --interpolation genericLabel --verbose 1
