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compSPI · Jan 29, 2022 · a652e10 · a652e10
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diff --git a/.codecov.yml b/.codecov.yml
diff --git a/.coveragerc b/.coveragerc
diff --git a/.deepsource.toml b/.deepsource.toml
diff --git a/.flake8 b/.flake8
diff --git a/.github/auto-assign.yml b/.github/auto-assign.yml
diff --git a/.github/workflows/build_container.yml b/.github/workflows/build_container.yml
diff --git a/.github/workflows/test_docker.yml b/.github/workflows/test_docker.yml
diff --git a/.github/workflows/test_singularity.yml b/.github/workflows/test_singularity.yml
diff --git a/.gitignore b/.gitignore
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
diff --git a/README.md b/README.md
diff --git a/data/4v6x.pdb b/data/4v6x.pdb
diff --git a/docker/Dockerfile b/docker/Dockerfile
diff --git a/docker/README.md b/docker/README.md
diff --git a/docker/action.yml b/docker/action.yml
diff --git a/docker/container.png b/docker/container.png
diff --git a/docker/entrypoint.sh b/docker/entrypoint.sh
diff --git a/environment.yml b/environment.yml
diff --git a/path_config.yaml b/path_config.yaml
diff --git a/pytest.ini b/pytest.ini
diff --git a/setup.py b/setup.py
diff --git a/simSPI/__init__.py b/simSPI/__init__.py
diff --git a/simSPI/crd.py b/simSPI/crd.py
diff --git a/simSPI/fov.py b/simSPI/fov.py
diff --git a/simSPI/linear_simulator/noise_utils.py b/simSPI/linear_simulator/noise_utils.py
diff --git a/simSPI/linear_simulator/shift_utils.py b/simSPI/linear_simulator/shift_utils.py
diff --git a/simSPI/multislice.py b/simSPI/multislice.py
diff --git a/simSPI/tem.py b/simSPI/tem.py
diff --git a/simSPI/transfer.py b/simSPI/transfer.py
diff --git a/sim_config.yaml b/sim_config.yaml
diff --git a/tests/__init__.py b/tests/__init__.py
diff --git a/tests/data/noise_data.npy b/tests/data/noise_data.npy
diff --git a/tests/data/shift_data.npy b/tests/data/shift_data.npy
diff --git a/tests/test_crd.py b/tests/test_crd.py
diff --git a/tests/test_files/4v6x.pdb b/tests/test_files/4v6x.pdb
diff --git a/tests/test_files/micrograph.npz b/tests/test_files/micrograph.npz
diff --git a/tests/test_files/path_config.yaml b/tests/test_files/path_config.yaml
diff --git a/tests/test_files/sample_parameter_dict.pkl b/tests/test_files/sample_parameter_dict.pkl
diff --git a/tests/test_files/sim_config.yaml b/tests/test_files/sim_config.yaml
diff --git a/tests/test_fov.py b/tests/test_fov.py
diff --git a/tests/test_multislice.py b/tests/test_multislice.py
diff --git a/tests/test_noise.py b/tests/test_noise.py
diff --git a/tests/test_shift.py b/tests/test_shift.py
diff --git a/tests/test_tem.py b/tests/test_tem.py
diff --git a/tests/test_transfer.py b/tests/test_transfer.py