automatic model characterisation and doc generator

clinssen · May 14, 2024 · 0e2a980 · 0e2a980
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diff --git a/doc/models_library/aeif_cond_alpha_characterisation.rst b/doc/models_library/aeif_cond_alpha_characterisation.rst
diff --git a/doc/models_library/aeif_cond_alpha_neuron_characterisation.rst b/doc/models_library/aeif_cond_alpha_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[aeif_cond_alpha_neuron].png
+   :alt: aeif_cond_alpha_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[aeif_cond_alpha_neuron].png
+   :alt: aeif_cond_alpha_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[aeif_cond_alpha_neuron].png
+   :alt: aeif_cond_alpha_neuron f-I curve
+
diff --git a/doc/models_library/aeif_cond_exp_characterisation.rst b/doc/models_library/aeif_cond_exp_characterisation.rst
diff --git a/doc/models_library/aeif_cond_exp_neuron_characterisation.rst b/doc/models_library/aeif_cond_exp_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[aeif_cond_exp_neuron].png
+   :alt: aeif_cond_exp_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[aeif_cond_exp_neuron].png
+   :alt: aeif_cond_exp_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[aeif_cond_exp_neuron].png
+   :alt: aeif_cond_exp_neuron f-I curve
+
diff --git a/doc/models_library/hh_cond_exp_destexhe_neuron_characterisation.rst b/doc/models_library/hh_cond_exp_destexhe_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[hh_cond_exp_destexhe_neuron].png
+   :alt: hh_cond_exp_destexhe_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[hh_cond_exp_destexhe_neuron].png
+   :alt: hh_cond_exp_destexhe_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[hh_cond_exp_destexhe_neuron].png
+   :alt: hh_cond_exp_destexhe_neuron f-I curve
+
diff --git a/doc/models_library/hh_cond_exp_traub_characterisation.rst b/doc/models_library/hh_cond_exp_traub_characterisation.rst
diff --git a/doc/models_library/hh_cond_exp_traub_neuron_characterisation.rst b/doc/models_library/hh_cond_exp_traub_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[hh_cond_exp_traub_neuron].png
+   :alt: hh_cond_exp_traub_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[hh_cond_exp_traub_neuron].png
+   :alt: hh_cond_exp_traub_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[hh_cond_exp_traub_neuron].png
+   :alt: hh_cond_exp_traub_neuron f-I curve
+
diff --git a/doc/models_library/hh_moto_5ht_neuron_characterisation.rst b/doc/models_library/hh_moto_5ht_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[hh_moto_5ht_neuron].png
+   :alt: hh_moto_5ht_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[hh_moto_5ht_neuron].png
+   :alt: hh_moto_5ht_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[hh_moto_5ht_neuron].png
+   :alt: hh_moto_5ht_neuron f-I curve
+
diff --git a/doc/models_library/hh_psc_alpha_characterisation.rst b/doc/models_library/hh_psc_alpha_characterisation.rst
diff --git a/doc/models_library/hh_psc_alpha_neuron_characterisation.rst b/doc/models_library/hh_psc_alpha_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[hh_psc_alpha_neuron].png
+   :alt: hh_psc_alpha_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[hh_psc_alpha_neuron].png
+   :alt: hh_psc_alpha_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[hh_psc_alpha_neuron].png
+   :alt: hh_psc_alpha_neuron f-I curve
+
diff --git a/doc/models_library/hill_tononi_neuron_characterisation.rst b/doc/models_library/hill_tononi_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[hill_tononi_neuron].png
+   :alt: hill_tononi_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[hill_tononi_neuron].png
+   :alt: hill_tononi_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[hill_tononi_neuron].png
+   :alt: hill_tononi_neuron f-I curve
+
diff --git a/doc/models_library/iaf_chxk_2008_neuron_characterisation.rst b/doc/models_library/iaf_chxk_2008_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[iaf_chxk_2008_neuron].png
+   :alt: iaf_chxk_2008_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[iaf_chxk_2008_neuron].png
+   :alt: iaf_chxk_2008_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[iaf_chxk_2008_neuron].png
+   :alt: iaf_chxk_2008_neuron f-I curve
+
diff --git a/doc/models_library/iaf_cond_alpha_characterisation.rst b/doc/models_library/iaf_cond_alpha_characterisation.rst
diff --git a/doc/models_library/iaf_cond_alpha_neuron_characterisation.rst b/doc/models_library/iaf_cond_alpha_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[iaf_cond_alpha_neuron].png
+   :alt: iaf_cond_alpha_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[iaf_cond_alpha_neuron].png
+   :alt: iaf_cond_alpha_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[iaf_cond_alpha_neuron].png
+   :alt: iaf_cond_alpha_neuron f-I curve
+
diff --git a/doc/models_library/iaf_cond_beta_characterisation.rst b/doc/models_library/iaf_cond_beta_characterisation.rst
diff --git a/doc/models_library/iaf_cond_beta_neuron_characterisation.rst b/doc/models_library/iaf_cond_beta_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[iaf_cond_beta_neuron].png
+   :alt: iaf_cond_beta_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[iaf_cond_beta_neuron].png
+   :alt: iaf_cond_beta_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[iaf_cond_beta_neuron].png
+   :alt: iaf_cond_beta_neuron f-I curve
+
diff --git a/doc/models_library/iaf_cond_exp_characterisation.rst b/doc/models_library/iaf_cond_exp_characterisation.rst
diff --git a/doc/models_library/iaf_cond_exp_neuron_characterisation.rst b/doc/models_library/iaf_cond_exp_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[iaf_cond_exp_neuron].png
+   :alt: iaf_cond_exp_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[iaf_cond_exp_neuron].png
+   :alt: iaf_cond_exp_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[iaf_cond_exp_neuron].png
+   :alt: iaf_cond_exp_neuron f-I curve
+
diff --git a/doc/models_library/iaf_cond_exp_sfa_rr_neuron_characterisation.rst b/doc/models_library/iaf_cond_exp_sfa_rr_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[iaf_cond_exp_sfa_rr_neuron].png
+   :alt: iaf_cond_exp_sfa_rr_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[iaf_cond_exp_sfa_rr_neuron].png
+   :alt: iaf_cond_exp_sfa_rr_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[iaf_cond_exp_sfa_rr_neuron].png
+   :alt: iaf_cond_exp_sfa_rr_neuron f-I curve
+
diff --git a/doc/models_library/iaf_psc_alpha_characterisation.rst b/doc/models_library/iaf_psc_alpha_characterisation.rst
diff --git a/doc/models_library/iaf_psc_alpha_neuron_characterisation.rst b/doc/models_library/iaf_psc_alpha_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[iaf_psc_alpha_neuron].png
+   :alt: iaf_psc_alpha_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[iaf_psc_alpha_neuron].png
+   :alt: iaf_psc_alpha_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[iaf_psc_alpha_neuron].png
+   :alt: iaf_psc_alpha_neuron f-I curve
+
diff --git a/doc/models_library/iaf_psc_delta_characterisation.rst b/doc/models_library/iaf_psc_delta_characterisation.rst
diff --git a/doc/models_library/iaf_psc_delta_neuron_characterisation.rst b/doc/models_library/iaf_psc_delta_neuron_characterisation.rst
@@ -0,0 +1,18 @@
+Synaptic response
+-----------------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_psp_[iaf_psc_delta_neuron].png
+   :alt: iaf_psc_delta_neuron postsynaptic response
+
+Response to pulse current injection
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_current_pulse_response_[iaf_psc_delta_neuron].png
+   :alt: iaf_psc_delta_neuron f-I curve
+
+f-I curve
+---------
+
+.. figure:: https://raw.githubusercontent.com/nest/nestml/master/doc/models_library/nestml_fI_curve_[iaf_psc_delta_neuron].png
+   :alt: iaf_psc_delta_neuron f-I curve
+
diff --git a/doc/models_library/iaf_psc_exp_characterisation.rst b/doc/models_library/iaf_psc_exp_characterisation.rst