Fixed regression with evidence source

clingen-data-model · Jul 10, 2024 · 0f0e8bb · 0f0e8bb
1 parent 8dd805c
commit 0f0e8bb
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/src/genegraph/gene_validity.clj b/src/genegraph/gene_validity.clj
@@ -41,7 +41,7 @@
 (def admin-env
   (if (or (System/getenv "DX_JAAS_CONFIG_DEV")
           (System/getenv "DX_JAAS_CONFIG")) ; prevent this in cloud deployments
-    {:platform "stage"
+    {:platform "prod"
      :dataexchange-genegraph (System/getenv "DX_JAAS_CONFIG")
      :local-data-path "data/"}
     {}))
@@ -54,7 +54,7 @@
                                (gql-schema/merged-schema
                                 {:executor direct-executor}))}
     "dev" (assoc (env/build-environment "522856288592" ["dataexchange-genegraph"])
-                 :version 5
+                 :version 6
                  :name "dev"
                  :function (System/getenv "GENEGRAPH_FUNCTION")
                  :kafka-user "User:2189780"
@@ -64,7 +64,7 @@
                  :graphql-schema (gql-schema/merged-schema
                                   {:executor direct-executor}))
     "stage" (assoc (env/build-environment "583560269534" ["dataexchange-genegraph"])
-                   :version 5
+                   :version 6
                    :name "stage"
                    :function (System/getenv "GENEGRAPH_FUNCTION")
                    :kafka-user "User:2592237"
@@ -75,7 +75,7 @@
                                     {:executor direct-executor}))
     "prod" (assoc (env/build-environment "974091131481" ["dataexchange-genegraph"])
                   :function (System/getenv "GENEGRAPH_FUNCTION")
-                  :version 3
+                  :version 4
                   :name "prod"
                   :kafka-user "User:2592237"
                   :fs-handle {:type :gcs
@@ -370,7 +370,7 @@
 (def gv-tdb
   {:type :rdf
    :name :gv-tdb
-   :snapshot-handle (assoc (:fs-handle env) :path "gv-tdb-v8.nq.gz")
+   :snapshot-handle (assoc (:fs-handle env) :path "gv-tdb-v9.nq.gz")
    :path (str (:local-data-path env) "/gv-tdb")})
 
 (def response-cache-db

diff --git a/src/genegraph/gene_validity/sepio_model/construct_variant_score.sparql b/src/genegraph/gene_validity/sepio_model/construct_variant_score.sparql
@@ -185,7 +185,7 @@ where {
   BIND(IF( ?zygosity = :geno/Homozygous , ?baseScore * 2 , ?baseScore) AS ?score) .
   BIND(IF( ?zygosity = :geno/Homozygous , ?calculatedScore * 2 , ?calculatedScore) AS ?resultCalculatedScore) .
 
-  ?annotation
+  ?annotation a gci:annotation ;
   (gci:families|gci:groups)? /
   gci:familyIncluded? /
   gci:individuals|gci:individualIncluded