Fix vrs dependency to include extras optional deps #6
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name: CI | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
types: [opened, synchronize, reopened] | |
jobs: | |
lint: | |
name: Lint | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.11 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
cache: pip | |
- name: Install dependencies | |
run: | | |
pip install '.[dev]' | |
- name: Black formatting | |
run: black --check clinvar_gk_pilot | |
- name: Sort imports | |
run: isort --check-only clinvar_gk_pilot | |
- name: Ruff lint | |
run: ruff check clinvar_gk_pilot | |
# Pylint catches some things that Ruff doesn't yet support | |
# Run error-only mode `--disable=C,R,W` == `-E` | |
- name: Pylint | |
run: pylint --disable=C,R,W clinvar_gk_pilot | |
test: | |
name: Run tests | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Setup Python 3.11 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
cache: pip | |
- name: Install dependencies | |
run: | | |
pip install '.[dev]' | |
- name: Run tests | |
run: pytest -v |