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Fix vrs dependency to include extras optional deps #6

Fix vrs dependency to include extras optional deps

Fix vrs dependency to include extras optional deps #6

Workflow file for this run

name: CI
on:
push:
branches:
- main
pull_request:
types: [opened, synchronize, reopened]
jobs:
lint:
name: Lint
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Setup Python 3.11
uses: actions/setup-python@v5
with:
python-version: 3.11
cache: pip
- name: Install dependencies
run: |
pip install '.[dev]'
- name: Black formatting
run: black --check clinvar_gk_pilot
- name: Sort imports
run: isort --check-only clinvar_gk_pilot
- name: Ruff lint
run: ruff check clinvar_gk_pilot
# Pylint catches some things that Ruff doesn't yet support
# Run error-only mode `--disable=C,R,W` == `-E`
- name: Pylint
run: pylint --disable=C,R,W clinvar_gk_pilot
test:
name: Run tests
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Setup Python 3.11
uses: actions/setup-python@v5
with:
python-version: 3.11
cache: pip
- name: Install dependencies
run: |
pip install '.[dev]'
- name: Run tests
run: pytest -v