⚗️ Updated the atomic defect-aware SiDB physical design experiment in accordance with the final paper

[marcelwa]

Description

This PR updates the atomic defect-aware SiDB physical design experiment in accordance with the final paper, which will be published at DATE 2024.

In particular, the experiment script was not computing the bounding box of the generated layout, leading to confusing results.

Checklist:

• The pull request only contains commits that are related to it.
• I have added appropriate tests and documentation.
• I have made sure that all CI jobs on GitHub pass.
• The pull request introduces no new warnings and follows the project's style guidelines.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (decdd0a) 96.02% compared to head (62e99ae) 96.02%.
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #330   +/-   ##
=======================================
  Coverage   96.02%   96.02%           
=======================================
  Files         100      100           
  Lines        9973     9973           
=======================================
  Hits         9577     9577           
  Misses        396      396           

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[github-actions]

clang-tidy review says "All clean, LGTM! 👍"