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Trim vaccine coverage dataset after 2023-09-10
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jeanpaulrsoucy committed Jan 27, 2024
1 parent 56bb421 commit b64baa9
Showing 1 changed file with 20 additions and 4 deletions.
24 changes: 20 additions & 4 deletions R/assemble_final_datasets.R
Original file line number Diff line number Diff line change
Expand Up @@ -1058,28 +1058,44 @@ assemble_final_datasets <- function() {
vaccine_coverage_dose_1_pt <- get_phac_d("vaccine_coverage_dose_1", "all") |>
# censor Quebec after 2022-07-17
dplyr::filter(!(.data$region == "QC" & date > as.Date("2022-07-17"))) |>
# censor other PTs after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)
vaccine_coverage_dose_2_pt <- get_phac_d("vaccine_coverage_dose_2", "all") |>
# censor Quebec after 2022-07-17
dplyr::filter(!(.data$region == "QC" & date > as.Date("2022-07-17"))) |>
# censor other PTs after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)
vaccine_coverage_dose_3_pt <- get_phac_d("vaccine_coverage_dose_3", "all") |>
# censor Quebec after 2022-07-17
dplyr::filter(!(.data$region == "QC" & date > as.Date("2022-07-17"))) |>
# censor other PTs after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)
vaccine_coverage_dose_4_pt <- get_phac_d("vaccine_coverage_dose_4", "all") |>
# censor Quebec after 2022-07-17
dplyr::filter(!(.data$region == "QC" & date > as.Date("2022-07-17"))) |>
# censor other PTs after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)

## Canadian datasets (NOT an aggregate of PT datasets)
vaccine_coverage_dose_1_can <- get_phac_d("vaccine_coverage_dose_1", "CAN") %>%
vaccine_coverage_dose_1_can <- get_phac_d("vaccine_coverage_dose_1", "CAN") |>
# censor after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)
vaccine_coverage_dose_2_can <- get_phac_d("vaccine_coverage_dose_2", "CAN") %>%
vaccine_coverage_dose_2_can <- get_phac_d("vaccine_coverage_dose_2", "CAN") |>
# censor after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)
vaccine_coverage_dose_3_can <- get_phac_d("vaccine_coverage_dose_3", "CAN") %>%
vaccine_coverage_dose_3_can <- get_phac_d("vaccine_coverage_dose_3", "CAN") |>
# censor after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)
vaccine_coverage_dose_4_can <- get_phac_d("vaccine_coverage_dose_4", "CAN") %>%
vaccine_coverage_dose_4_can <- get_phac_d("vaccine_coverage_dose_4", "CAN") |>
# censor after 2023-09-10
max_date("2023-09-10") |>
dataset_format("pt", digits = 2)

# vaccine_administration dataset
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