Compatibility version bump of dependencies

- some old dependencies don't work anymore - ngshmmalign, bwa_QA, initial_vicuna_msa, msa, testbench depency mafft: 7.305->7.526 - while we're at it, version bump smallgenomeutilities 0.4.1
cbg-ethz · May 28, 2024 · 9bd42ce · 9bd42ce
1 parent 0938ef1
commit 9bd42ce
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Showing 6 changed files with 7 additions and 7 deletions.
diff --git a/workflow/envs/bwa_QA.yaml b/workflow/envs/bwa_QA.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
 dependencies:
   - bwa=0.7.17
-  - mafft=7.458
+  - mafft=7.526
diff --git a/workflow/envs/hmm_align.yaml b/workflow/envs/hmm_align.yaml
@@ -2,5 +2,5 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - mafft=7.305
+  - mafft=7.526
   - ngshmmalign=0.1.1
diff --git a/workflow/envs/initial_vicuna_msa.yaml b/workflow/envs/initial_vicuna_msa.yaml
@@ -2,5 +2,5 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - mafft=7.458
-  - smallgenomeutilities=0.3.1
+  - mafft=7.526
+  - smallgenomeutilities=0.4.1
diff --git a/workflow/envs/msa.yaml b/workflow/envs/msa.yaml
@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - mafft=7.458
+  - mafft=7.526
diff --git a/workflow/envs/smallgenomeutilities.yaml b/workflow/envs/smallgenomeutilities.yaml
@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - smallgenomeutilities=0.3.9
+  - smallgenomeutilities=0.4.1
diff --git a/workflow/envs/testbench.yaml b/workflow/envs/testbench.yaml
@@ -7,4 +7,4 @@ dependencies:
   - sh
   - biopython
   - pandas
-  - mafft=7.305
+  - mafft=7.526