Bugfix

cbg-ethz · Apr 28, 2024 · 44cd13f · 44cd13f
1 parent 5a0bdcc
commit 44cd13f
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/scatrex/scatrex.py b/scatrex/scatrex.py
@@ -389,7 +389,7 @@ def update_anndata(self, adata):
             adata.layers["scatrex_mean"] = mean_mat
 
     def learn(self, adata, observed_tree=None, counts_layer='counts', allow_subtrees=True, allow_root_subtrees=False, root_cells=None, 
-              batch_size=None, seed=42, weights_concentration=1e6, update_outer_ass=False,
+              batch_size=None, seed=42, weights_variance=1., update_outer_ass=False,
               n_epochs=100, mc_samples=10, step_size=0.01, n_iters=10, n_merges=10, n_swaps=10, memoized=True, dp_alpha=.1, dp_gamma=.1):
         """
         Complete NTSSB learning procedure. 
@@ -401,7 +401,7 @@ def learn(self, adata, observed_tree=None, counts_layer='counts', allow_subtrees
         self.ntssb = NTSSB(self.observed_tree, 
                            node_hyperparams=self.model_args, 
                            seed=seed,
-                           weights_concentration=weights_concentration)
+                           weights_variance=weights_variance)
         self.ntssb.add_data(np.array(adata.layers[counts_layer]))
         self.ntssb.make_batches(batch_size, seed)
         self.ntssb.reset_variational_parameters()
@@ -1098,7 +1098,7 @@ def plot_tree(
                         mapper = self.ntssb.gene_node_colormaps[kwargs["genemode"]][
                             "mapper"
                         ][gene_pos]
-                    cbar = plt.colorbar(mapper, label=cbtitle)
+                    cbar = plt.colorbar(mapper, ax=g, label=cbtitle)
                     if kwargs["genemode"] == "observed":
                         n_discrete_levels = self.ntssb.gene_node_colormaps["observed"][
                             "mapper"