Reconfiger MARK03 - post log prob fix

* setup mark03

* remove MP§

workflows/mark03.smk

@@ -17,14 +17,14 @@ from pyggdrasil.tree_inference import CellSimulationId, TreeType, TreeId, McmcCo
 
 #####################
 # Environment variables
-DATADIR = "../data"
-#DATADIR = "/cluster/work/bewi/members/gkoehn/data"
+#DATADIR = "../data"
+DATADIR = "/cluster/work/bewi/members/gkoehn/data"
 
 #####################
 experiment = "mark03"
 
 # Metrics: Distances / Similarity Measure to use
-metrics = ["MP3", "AD", "log_prob", "DL"]  # <-- configure distances here
+metrics = ["AD", "log_prob", "DL"]  # also MP3 <-- configure distances here
 
 #####################
 # Error Parameters
@@ -64,7 +64,7 @@ CS_seed = 42  # <-- configure cell simulation seed here
 #####################
 # True Tree Parameters
 tree_types = ["r"]  # <-- configure tree type here ["r","s","d"]
-tree_seeds = [42]  # <-- configure tree seed here
+tree_seeds = [42,34]  # <-- configure tree seed here
 
 #####################
 #####################

workflows/tree_inference.smk

@@ -19,9 +19,9 @@ from pyggdrasil.tree_inference import (
 ###############################################
 ## Relative path from DATADIR to the repo root
 
-#REPODIR = "/cluster/work/bewi/members/gkoehn/repos/PYggdrasil"
-REPODIR = ".."
-#DATADIR = "/cluster/work/bewi/members/gkoehn/data"
+REPODIR = "/cluster/work/bewi/members/gkoehn/repos/PYggdrasil"
+#REPODIR = ".."
+DATADIR = "/cluster/work/bewi/members/gkoehn/data"
 
 ###############################################