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Is there a reason to use CPM as the normalization method? #12

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sng-soo opened this issue Sep 12, 2024 · 0 comments
Open

Is there a reason to use CPM as the normalization method? #12

sng-soo opened this issue Sep 12, 2024 · 0 comments

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@sng-soo
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sng-soo commented Sep 12, 2024 •
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Hello,

Thank you for developing the PISCES pipeline.

Is there a reason to use CPM when normalising transcriptomics data?
As far as I know, CPM is an old method that is now rarely used. (We mostly use TPM these days.)

Many thanks,

Kim
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