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shackett committed Sep 21, 2023
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cran-comments.md
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## romic 1.1.3

### New Features

- `get_tomic_table()` makes it easy to pull individual tables out of tomic objects. #55

### Minor Improvements and Fixes

- Bug fix in `add_pcs()` #52
- added option to not display percent variance explained on PCs to `add_pcs()` #53
- Added passing of axis and colorbar labels in `plot_heatmap()` #60
- Updated romic-package alias so package documentation properly displays with `?romic` #63
- Renamed tests and greatly expanded test coverage. #64

## romic 1.1.1

### New Features
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- `add_pc_loadings()` changed to `add_pcs()` for accuracy. Added fraction of variability explained by PCs to `add_pcs()`. #32
- `plot_univariate()` and `plot_bivariate()` supporting providing a partial string match to a variable name. This helps to generate consisitent plots even if names might change (like PC1 (10%)). #44
- tidy_omics and triple_omics can now include a list with unstructured data. This puts the convention more in line with an H5AD file. #43. This is currently only used to return the fraction of variance explained by each PC as part of `add_pcs()`. #42
- Updated synteax for

### Minor Improvements and Fixes

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## Test environments
* local OS X install, R 4.1.2
* Ubuntu 20.04 - Devel (Github Actions), R (2023-02-01 r83747)
* Ubuntu 20.04 - Release (Github Actions), R 4.2.2
* Windows - latest (Github Actions), R 4.2.2
* OSX - latest (Github Actions), R 4.2.2
* local OS X install, R 4.3.1
* Ubuntu 22.04.3 LTS - Devel (Github Actions), R 4.4.0 (ge:16)
* Ubuntu 22.04.3 LTS - Release (Github Actions), 4.3.1 (2023-06-16)
* Windows - Windows Server 2022 x64 (Github Actions), R 4.3.1
* OSX - macOS Monterey 12.6.8 (Github Actions), R 4.3.1

## R CMD check results
R CMD check --as-cran romic_1.1.1.tar.gz
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