Merge pull request #4765 from alisman/upAPI1030

Update API clients
cBioPortal · Oct 30, 2023 · 1a41aa4 · 1a41aa4
2 parents ace14e1 + b35ca82
commit 1a41aa4
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diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json
@@ -1376,59 +1376,6 @@
         }
       }
     },
-    "ClinVar": {
-      "type": "object",
-      "properties": {
-        "alleleId": {
-          "type": "integer",
-          "format": "int32",
-          "description": "allele_id"
-        },
-        "alt": {
-          "type": "string",
-          "description": "alt"
-        },
-        "chrom": {
-          "type": "string",
-          "description": "chrom"
-        },
-        "cytogenic": {
-          "type": "string",
-          "description": "cytogenic"
-        },
-        "gene": {
-          "description": "gene",
-          "$ref": "#/definitions/Gene"
-        },
-        "hg19": {
-          "description": "hg19",
-          "$ref": "#/definitions/Hg19"
-        },
-        "hg38": {
-          "description": "hg38",
-          "$ref": "#/definitions/Hg38"
-        },
-        "hgvs": {
-          "description": "hgvs",
-          "$ref": "#/definitions/Hgvs"
-        },
-        "license": {
-          "type": "string",
-          "description": "license"
-        },
-        "rcv": {
-          "type": "array",
-          "items": {
-            "$ref": "#/definitions/Rcv"
-          }
-        },
-        "variantId": {
-          "type": "integer",
-          "format": "int32",
-          "description": "variant_id"
-        }
-      }
-    },
     "Clinvar": {
       "type": "object",
       "properties": {
@@ -2782,7 +2729,7 @@
       "properties": {
         "clinVar": {
           "description": "clinvar",
-          "$ref": "#/definitions/ClinVar"
+          "$ref": "#/definitions/MyVariantInfoClinVar"
         },
         "cosmic": {
           "description": "cosmic",
@@ -2840,6 +2787,59 @@
         }
       }
     },
+    "MyVariantInfoClinVar": {
+      "type": "object",
+      "properties": {
+        "alleleId": {
+          "type": "integer",
+          "format": "int32",
+          "description": "allele_id"
+        },
+        "alt": {
+          "type": "string",
+          "description": "alt"
+        },
+        "chrom": {
+          "type": "string",
+          "description": "chrom"
+        },
+        "cytogenic": {
+          "type": "string",
+          "description": "cytogenic"
+        },
+        "gene": {
+          "description": "gene",
+          "$ref": "#/definitions/Gene"
+        },
+        "hg19": {
+          "description": "hg19",
+          "$ref": "#/definitions/Hg19"
+        },
+        "hg38": {
+          "description": "hg38",
+          "$ref": "#/definitions/Hg38"
+        },
+        "hgvs": {
+          "description": "hgvs",
+          "$ref": "#/definitions/Hgvs"
+        },
+        "license": {
+          "type": "string",
+          "description": "license"
+        },
+        "rcv": {
+          "type": "array",
+          "items": {
+            "$ref": "#/definitions/Rcv"
+          }
+        },
+        "variantId": {
+          "type": "integer",
+          "format": "int32",
+          "description": "variant_id"
+        }
+      }
+    },
     "NucleotideContext": {
       "type": "object",
       "required": [
@@ -3624,7 +3624,7 @@
           "description": "NCBI build number"
         },
         "clinvar": {
-          "description": "ClinVar",
+          "description": "MyVariantInfoClinVar",
           "$ref": "#/definitions/ClinvarAnnotation"
         },
         "colocatedVariants": {
@@ -3638,6 +3638,9 @@
           "format": "int32",
           "description": "End position"
         },
+        "errorMessage": {
+          "type": "string"
+        },
         "genomicLocationExplanation": {
           "type": "string"
         },

diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts
@@ -84,30 +84,6 @@ export type Citations = {
 
         'pmids': Array < string >
 
-};
-export type ClinVar = {
-    'alleleId': number
-
-        'alt': string
-
-        'chrom': string
-
-        'cytogenic': string
-
-        'gene': Gene
-
-        'hg19': Hg19
-
-        'hg38': Hg38
-
-        'hgvs': Hgvs
-
-        'license': string
-
-        'rcv': Array < Rcv >
-
-        'variantId': number
-
 };
 export type Clinvar = {
     'alternateAllele': string
@@ -605,7 +581,7 @@ export type Mutdb = {
 
 };
 export type MyVariantInfo = {
-    'clinVar': ClinVar
+    'clinVar': MyVariantInfoClinVar
 
         'cosmic': Cosmic
 
@@ -635,6 +611,30 @@ export type MyVariantInfoAnnotation = {
 
         'license': string
 
+};
+export type MyVariantInfoClinVar = {
+    'alleleId': number
+
+        'alt': string
+
+        'chrom': string
+
+        'cytogenic': string
+
+        'gene': Gene
+
+        'hg19': Hg19
+
+        'hg38': Hg38
+
+        'hgvs': Hgvs
+
+        'license': string
+
+        'rcv': Array < Rcv >
+
+        'variantId': number
+
 };
 export type NucleotideContext = {
     'hgvs': string
@@ -988,6 +988,8 @@ export type VariantAnnotation = {
 
         'end': number
 
+        'errorMessage': string
+
         'genomicLocationExplanation': string
 
         'hgvsg': string

diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json
@@ -1104,59 +1104,6 @@
         }
       }
     },
-    "ClinVar": {
-      "type": "object",
-      "properties": {
-        "alleleId": {
-          "type": "integer",
-          "format": "int32",
-          "description": "allele_id"
-        },
-        "alt": {
-          "type": "string",
-          "description": "alt"
-        },
-        "chrom": {
-          "type": "string",
-          "description": "chrom"
-        },
-        "cytogenic": {
-          "type": "string",
-          "description": "cytogenic"
-        },
-        "gene": {
-          "description": "gene",
-          "$ref": "#/definitions/Gene"
-        },
-        "hg19": {
-          "description": "hg19",
-          "$ref": "#/definitions/Hg19"
-        },
-        "hg38": {
-          "description": "hg38",
-          "$ref": "#/definitions/Hg38"
-        },
-        "hgvs": {
-          "description": "hgvs",
-          "$ref": "#/definitions/Hgvs"
-        },
-        "license": {
-          "type": "string",
-          "description": "license"
-        },
-        "rcv": {
-          "type": "array",
-          "items": {
-            "$ref": "#/definitions/Rcv"
-          }
-        },
-        "variantId": {
-          "type": "integer",
-          "format": "int32",
-          "description": "variant_id"
-        }
-      }
-    },
     "Cosmic": {
       "type": "object",
       "properties": {
@@ -1846,7 +1793,7 @@
       "properties": {
         "clinVar": {
           "description": "clinvar",
-          "$ref": "#/definitions/ClinVar"
+          "$ref": "#/definitions/MyVariantInfoClinVar"
         },
         "cosmic": {
           "description": "cosmic",
@@ -1893,6 +1840,59 @@
         }
       }
     },
+    "MyVariantInfoClinVar": {
+      "type": "object",
+      "properties": {
+        "alleleId": {
+          "type": "integer",
+          "format": "int32",
+          "description": "allele_id"
+        },
+        "alt": {
+          "type": "string",
+          "description": "alt"
+        },
+        "chrom": {
+          "type": "string",
+          "description": "chrom"
+        },
+        "cytogenic": {
+          "type": "string",
+          "description": "cytogenic"
+        },
+        "gene": {
+          "description": "gene",
+          "$ref": "#/definitions/Gene"
+        },
+        "hg19": {
+          "description": "hg19",
+          "$ref": "#/definitions/Hg19"
+        },
+        "hg38": {
+          "description": "hg38",
+          "$ref": "#/definitions/Hg38"
+        },
+        "hgvs": {
+          "description": "hgvs",
+          "$ref": "#/definitions/Hgvs"
+        },
+        "license": {
+          "type": "string",
+          "description": "license"
+        },
+        "rcv": {
+          "type": "array",
+          "items": {
+            "$ref": "#/definitions/Rcv"
+          }
+        },
+        "variantId": {
+          "type": "integer",
+          "format": "int32",
+          "description": "variant_id"
+        }
+      }
+    },
     "NucleotideContext": {
       "type": "object",
       "required": [