taxonid - Get taxon id from NCBI taxonomy database

Install

From Conda

[sudo] conda install -c conda-forge taxonid

Use

CLI

python -m taxonid "Escherichia coli str. K-12 substr. MG1655"

As a Python module

from taxonid import get_from_label

taxon_id = get_from_label("Escherichia coli str. K-12 substr. MG1655")

Tests

Please follow instructions below ti run tests:

cd tests
pytest -v

For further tests and development tools, a CI toolkit is provided in ci folder (see ci/README.md). -->

Authors

• Joan Hérisson

Acknowledgments

• ChatGPT

Licence

taxonid is released under the MIT licence. See the LICENCE file for details.