Merge pull request #33 from broadinstitute/sc_by_guide

add single_cell_by_guide to normalize
broadinstitute · Jan 28, 2022 · a82c905 · a82c905
2 parents 5c5c239 + 5b256d9
commit a82c905
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diff --git a/config/docs/options_README.md b/config/docs/options_README.md
@@ -243,6 +243,8 @@ e.g.* median
 Set to* true *or* false.  
 `force_overwrite:` *Do you want to overwrite any existing data?  
 Set to* true *or* false.  
+`output_single_cell_by_guide:` *Do you want to create an additional output of normalized single cell profiles saved on a per-guide basis?
+Set to* true *or* false.  
 `method:` *String indicating how the dataframe will be normalized. e.g.* standardize  
 `levels:` *This step "normalizes" the features to exist on the same scale and range. The levels argument asks at which "profile" level is the normalization performed. e.g.*  
     - gene  

diff --git a/config/options.yaml b/config/options.yaml
@@ -123,6 +123,7 @@ profile:
   normalize:
     perform: true
     force_overwrite: true
+    output_single_cell_by_guide: true
     method: standardize
     levels:
       - gene