Skip to content

CellBender 0.3.2 release

Latest
Compare
Choose a tag to compare
@sjfleming sjfleming released this 17 Jul 18:34
04c2f5b

This release matches the outputs of v0.3.0, but aims to reduce peak memory usage and fix some bugs. This will hopefully enable users to get away with less RAM (CPU) even when the number of --total-droplets-included gets large (such as overloaded experiments, etc.).

NOTE: v0.3.1 was briefly released and then redacted. If you have an install of v0.3.1, do not use it, as it contains a major bug which was fixed in #347 .

Improvements:

  • Make posterior generation more memory efficient

New features:

  • WDL workflow updates to facilitate automatic retries on failure
  • Added to list of allowed feature types to match 2024.04 CellRanger definitions

Bug fixes:

  • Fix bug with MTX inputs for WDL
  • Fix Windows bug during posterior generation
  • Fix report generation bugs on Mac and Windows