ci workflows support new split htslib. support new wheel. suport wind… #137
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| name: Wheels | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*.*.*" | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| description: "Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)" | |
| required: false | |
| default: false | |
| schedule: | |
| # run weekly on a Monday | |
| - cron: "0 0 * * 1" | |
| jobs: | |
| build_wheels: | |
| name: Build wheels for ${{ matrix.python-version }}-${{ matrix.buildplat[1] }} | |
| runs-on: ${{ matrix.buildplat[0] }} | |
| strategy: | |
| matrix: | |
| buildplat: | |
| - [ubuntu-22.04, manylinux_x86_64] | |
| - [ubuntu-22.04, musllinux_x86_64] | |
| - [ubuntu-22.04, manylinux_aarch64] | |
| - [ubuntu-22.04, musllinux_aarch64] | |
| # macOS build arm64 on x86_64 with cross-compiler | |
| - [macos-12, macosx_x86_64] | |
| python-version: [pp310, cp37, cp38, cp39, cp310, cp311, cp312] | |
| exclude: | |
| # pp310, cp37, cp38 on musllinux is not support | |
| - buildplat: [ubuntu-22.04, musllinux_x86_64] | |
| python-version: cp37 | |
| - buildplat: [ubuntu-22.04, musllinux_x86_64] | |
| python-version: cp38 | |
| - buildplat: [ubuntu-22.04, musllinux_x86_64] | |
| python-version: pp310 | |
| - buildplat: [ubuntu-22.04, musllinux_aarch64] | |
| python-version: cp37 | |
| - buildplat: [ubuntu-22.04, musllinux_aarch64] | |
| python-version: cp38 | |
| - buildplat: [ubuntu-22.04, musllinux_aarch64] | |
| python-version: pp310 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Set up QEMU | |
| if: runner.os == 'Linux' | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| with: | |
| package-dir: . | |
| output-dir: wheelhouse | |
| config-file: "{package}/pyproject.toml" | |
| env: | |
| # select | |
| CIBW_BUILD: ${{ matrix.python-version }}-${{ matrix.buildplat[1] }} | |
| # linux | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| # manylinux2014 can't build on aarch64 | |
| CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28 | |
| CIBW_MUSLLINUX_X86_64_IMAGE: musllinux_1_2 | |
| CIBW_MUSLLINUX_AARCH64_IMAGE: musllinux_1_2 | |
| CIBW_ARCHS_LINUX: auto64 aarch64 | |
| CIBW_BEFORE_BUILD_LINUX: "{project}/ci/linux-deps" | |
| CIBW_REPAIR_WHEEL_COMMAND_LINUX: 'LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib64" && auditwheel repair -w {dest_dir} {wheel}' | |
| # macos | |
| CIBW_ARCHS_MACOS: auto64 arm64 | |
| CIBW_BEFORE_BUILD_MACOS: "{project}/ci/osx-deps" | |
| # build | |
| CIBW_ENVIRONMENT: >- | |
| CYVCF2_HTSLIB_CONFIGURE_OPTIONS="--enable-libcurl --enable-s3 --enable-lzma --enable-bz2 --with-libdeflate" | |
| CYTHONIZE=1 | |
| CIBW_TEST_COMMAND: "{project}/ci/test" | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| - name: Setup tmate session | |
| if: ${{ always() && github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled == 'true' }} | |
| uses: mxschmitt/action-tmate@v3 | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: ./wheelhouse/*.whl | |
| build_sdist: | |
| name: Build source distribution | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: actions/setup-python@v5 | |
| name: Install Python | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| pip install -r requirements.txt | |
| - name: Build sdist | |
| run: CYTHONIZE=1 python setup.py sdist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: dist/*.tar.gz | |
| upload_pypi: | |
| needs: [build_wheels, build_sdist] | |
| runs-on: ubuntu-22.04 | |
| # upload to PyPI on every tag starting with 'v' | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: artifact | |
| path: dist | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |