bump version for new CI/wheel fixes #193
Workflow file for this run
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name: Build | |
on: [push, pull_request] | |
jobs: | |
docker-build-and-test: | |
name: Docker Build and Test on ${{ matrix.platform }} | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
platform: | |
- linux/amd64 | |
- linux/arm64 | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: recursive | |
- name: Set up QEMU | |
uses: docker/setup-qemu-action@v3 | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Docker Build and Push | |
uses: docker/build-push-action@v5 | |
with: | |
context: . | |
file: ./ci/Dockerfile.test | |
platforms: ${{ matrix.platform }} | |
tags: cyvcf2:test | |
push: false | |
load: true | |
build-args: | | |
PYTHON_VERSION=slim | |
- name: Docker Run Tests | |
run: | | |
docker run --rm --platform ${{ matrix.platform }} cyvcf2:test pytest --cov cyvcf2 --cov-report term-missing | |
build: | |
name: Run tests on Python ${{ matrix.python-version }} | |
runs-on: ubuntu-20.04 | |
strategy: | |
matrix: | |
python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
submodules: true | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install | |
run: | | |
sudo apt-get update | |
sudo apt-get install libcurl4-openssl-dev | |
pip install -r requirements.txt | |
pip install pytest pytest-cov | |
git submodule update --init --recursive | |
cd htslib | |
autoheader && autoconf && autoreconf --install | |
./configure --enable-s3 --disable-lzma --disable-bz2 | |
make | |
cd .. | |
CYTHONIZE=1 python setup.py build_ext -i | |
- name: Test | |
run: | | |
pytest --cov cyvcf2 --cov-report term-missing | |