Fix wheel build (#287) #133
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| name: Wheels | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - 'v*.*.*' | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: false | |
| schedule: | |
| # run weekly on a Monday | |
| - cron: '0 0 * * 1' | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: "3.12" | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install -U cibuildwheel | |
| - name: Build wheels for Linux | |
| if: matrix.os == 'ubuntu-20.04' | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_SKIP: "pp* *i686* *musllinux*" | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| CIBW_BEFORE_BUILD_LINUX: "{project}/ci/linux-deps" | |
| CIBW_TEST_COMMAND: "{project}/ci/test" | |
| CIBW_ENVIRONMENT: "CYTHONIZE=1 LIBDEFLATE=1 LDFLAGS='-L/usr/lib64/openssl11' CPPFLAGS='-I/usr/include/openssl11' C_INCLUDE_PATH='/root/include' LIBRARY_PATH='/root/lib'" | |
| CIBW_REPAIR_WHEEL_COMMAND_LINUX: LD_LIBRARY_PATH='/root/lib' auditwheel repair -w {dest_dir} {wheel} | |
| - name: Build wheels for Mac OS x86 | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_SKIP: "pp* *i686*" | |
| CIBW_ARCHS_MACOS: "x86_64" | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| CIBW_BEFORE_BUILD_MACOS: "{project}/ci/osx-deps" | |
| CIBW_TEST_COMMAND: "{project}/ci/test" | |
| CIBW_ENVIRONMENT: "CYTHONIZE=1 LIBDEFLATE=1 C_INCLUDE_PATH='/usr/local/include' LIBRARY_PATH='/usr/local/lib'" | |
| # https://cibuildwheel.readthedocs.io/en/stable/faq/#macos-passing-dyld_library_path-to-delocate | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: > | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-listdeps {wheel} && | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-wheel --require-archs {delocate_archs} -w {dest_dir} {wheel} | |
| LDFLAGS: "-L/usr/local/opt/[email protected]/lib" | |
| CPPFLAGS: "-I/usr/local/opt/[email protected]/include" | |
| PKG_CONFIG_PATH: "/usr/local/opt/[email protected]/lib/pkgconfig" | |
| - name: Build wheels for Mac OS arm64 | |
| # don't build with libdeflate, see https://github.com/brentp/cyvcf2/issues/252 | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_SKIP: "pp* *i686*" | |
| CIBW_ARCHS_MACOS: "arm64" | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| CIBW_BEFORE_BUILD_MACOS: "{project}/ci/osx-arm64-deps" | |
| CIBW_TEST_COMMAND: "{project}/ci/test" | |
| CIBW_TEST_SKIP: "*-macosx_arm64" | |
| CIBW_ENVIRONMENT: "CYTHONIZE=1 C_INCLUDE_PATH='/usr/local/include' LIBRARY_PATH='/usr/local/lib'" | |
| # https://cibuildwheel.readthedocs.io/en/stable/faq/#macos-passing-dyld_library_path-to-delocate | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: > | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-listdeps {wheel} && | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-wheel --require-archs {delocate_archs} -w {dest_dir} {wheel} | |
| LDFLAGS: "-L/usr/local/opt/[email protected]/lib" | |
| CPPFLAGS: "-I/usr/local/opt/[email protected]/include" | |
| PKG_CONFIG_PATH: "/usr/local/opt/[email protected]/lib/pkgconfig" | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| - name: Setup tmate session | |
| if: ${{ always() && github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled == 'true' }} | |
| uses: mxschmitt/action-tmate@v3 | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: ./wheelhouse/*.whl | |
| build_sdist: | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev libbz2-dev liblzma-dev libssl-dev | |
| git submodule update --init --recursive | |
| cd htslib | |
| autoheader && autoconf && autoreconf --install | |
| ./configure --enable-libcurl --enable-s3 --enable-lzma --enable-bz2 | |
| make | |
| cd .. | |
| pip install -r requirements.txt | |
| - name: Build sdist | |
| run: CYTHONIZE=1 python setup.py sdist | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: dist/*.tar.gz | |
| upload_pypi: | |
| needs: [build_wheels, build_sdist] | |
| runs-on: ubuntu-latest | |
| # upload to PyPI on every tag starting with 'v' | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') | |
| steps: | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: artifact | |
| path: dist | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |