Wheels #130
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Wheels | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - 'v*.*.*' | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: false | |
| schedule: | |
| # run weekly on a Monday | |
| - cron: '0 0 * * 1' | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: "3.7" | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install -U cibuildwheel | |
| - name: Build wheels for Linux | |
| if: matrix.os == 'ubuntu-20.04' | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_SKIP: "pp* *i686* *musllinux*" | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| CIBW_BEFORE_BUILD_LINUX: "{project}/ci/linux-deps" | |
| CIBW_TEST_COMMAND: "{project}/ci/test" | |
| CIBW_ENVIRONMENT: "CYTHONIZE=1 LIBDEFLATE=1 LDFLAGS='-L/usr/lib64/openssl11' CPPFLAGS='-I/usr/include/openssl11' C_INCLUDE_PATH='/root/include' LIBRARY_PATH='/root/lib'" | |
| CIBW_REPAIR_WHEEL_COMMAND_LINUX: LD_LIBRARY_PATH='/root/lib' auditwheel repair -w {dest_dir} {wheel} | |
| - name: Build wheels for Mac OS x86 | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_SKIP: "pp* *i686*" | |
| CIBW_ARCHS_MACOS: "x86_64" | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| CIBW_BEFORE_BUILD_MACOS: "{project}/ci/osx-deps" | |
| CIBW_TEST_COMMAND: "{project}/ci/test" | |
| CIBW_ENVIRONMENT: "CYTHONIZE=1 LIBDEFLATE=1 C_INCLUDE_PATH='/usr/local/include' LIBRARY_PATH='/usr/local/lib'" | |
| # https://cibuildwheel.readthedocs.io/en/stable/faq/#macos-passing-dyld_library_path-to-delocate | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: > | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-listdeps {wheel} && | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-wheel --require-archs {delocate_archs} -w {dest_dir} {wheel} | |
| LDFLAGS: "-L/usr/local/opt/[email protected]/lib" | |
| CPPFLAGS: "-I/usr/local/opt/[email protected]/include" | |
| PKG_CONFIG_PATH: "/usr/local/opt/[email protected]/lib/pkgconfig" | |
| - name: Build wheels for Mac OS arm64 | |
| # don't build with libdeflate, see https://github.com/brentp/cyvcf2/issues/252 | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_SKIP: "pp* *i686*" | |
| CIBW_ARCHS_MACOS: "arm64" | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| CIBW_BEFORE_BUILD_MACOS: "{project}/ci/osx-arm64-deps" | |
| CIBW_TEST_COMMAND: "{project}/ci/test" | |
| CIBW_TEST_SKIP: "*-macosx_arm64" | |
| CIBW_ENVIRONMENT: "CYTHONIZE=1 C_INCLUDE_PATH='/usr/local/include' LIBRARY_PATH='/usr/local/lib'" | |
| # https://cibuildwheel.readthedocs.io/en/stable/faq/#macos-passing-dyld_library_path-to-delocate | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: > | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-listdeps {wheel} && | |
| DYLD_LIBRARY_PATH=/usr/local/lib delocate-wheel --require-archs {delocate_archs} -w {dest_dir} {wheel} | |
| LDFLAGS: "-L/usr/local/opt/[email protected]/lib" | |
| CPPFLAGS: "-I/usr/local/opt/[email protected]/include" | |
| PKG_CONFIG_PATH: "/usr/local/opt/[email protected]/lib/pkgconfig" | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| - name: Setup tmate session | |
| if: ${{ always() && github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled }} | |
| uses: mxschmitt/action-tmate@v3 | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: ./wheelhouse/*.whl | |
| build_sdist: | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| name: Install Python | |
| with: | |
| python-version: "3.7" | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev libbz2-dev liblzma-dev libssl-dev | |
| git submodule update --init --recursive | |
| cd htslib | |
| autoheader && autoconf && autoreconf --install | |
| ./configure --enable-libcurl --enable-s3 --enable-lzma --enable-bz2 | |
| make | |
| cd .. | |
| pip install -r requirements.txt | |
| - name: Build sdist | |
| run: CYTHONIZE=1 python setup.py sdist | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: dist/*.tar.gz | |
| upload_pypi: | |
| needs: [build_wheels, build_sdist] | |
| runs-on: ubuntu-latest | |
| # upload to PyPI on every tag starting with 'v' | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') | |
| steps: | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: artifact | |
| path: dist | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |