wip

boettiger-lab · Feb 16, 2024 · 1cfde72 · 1cfde72
1 parent ea02c6c
commit 1cfde72
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Showing 4 changed files with 10 additions and 3 deletions.
diff --git a/images/Dockerfile.gpu b/images/Dockerfile.gpu
@@ -18,9 +18,11 @@ RUN apt-get update -qq && xargs sudo apt-get -y install < apt.txt
 COPY install.R /tmp/install.R
 RUN Rscript /tmp/install.R && rm /tmp/install.R 
 
-# some git preferences
+# some preferences
 RUN git config --system pull.rebase false && \
-    git config --system credential.helper 'cache --timeout=30000'
+    git config --system credential.helper 'cache --timeout=30000' && \
+    echo '"\e[5~": history-search-backward' >> /etc/inputrc && \
+    echo '"\e[6~": history-search-forward' >> /etc/inputrc
 
 USER ${NB_USER}
 WORKDIR /home/${NB_USER}

diff --git a/images/apt.txt b/images/apt.txt
@@ -3,4 +3,5 @@ cmake
 nano
 exuberant-ctags
 gh
+qpdf
 
diff --git a/images/rl-requirements.txt b/images/rl-requirements.txt
@@ -12,4 +12,7 @@ huggingface_sb3
 darts[all]
 scikit-optimize
 gputil
+pytest
+nox
+ruff
 
diff --git a/jupyterhub/thelio-config.yaml b/jupyterhub/thelio-config.yaml
@@ -89,7 +89,8 @@ hub:
       environment:
         SHELL: /usr/bin/bash
         GH_SCOPED_CREDS_CLIENT_ID: "Iv1.8d384d9612c2ecc3"
-      extra_pod_config:
+        GH_SCOPED_CREDS_APP_URL: "https://github.com/apps/jupyterhub-gh-creds"
+    extra_pod_config:
         runtimeClassName: "nvidia"
     Authenticator:
       admin_users: