new gpu image

images/Dockerfile.gpu

@@ -1,51 +1,35 @@
-FROM docker.io/rocker/ml
+FROM quay.io/jupyter/pytorch-notebook:cuda12-ubuntu-24.04
 
-ENV NB_USER rstudio
-ENV VIRTUAL_ENV /opt/venv
-ENV PATH ${VIRTUAL_ENV}/bin:$PATH
+COPY jupyter-ai.yml environment.yml
+RUN conda update -n base -c conda-forge conda && \
+    conda env update --file environment.yml
 
-RUN /rocker_scripts/install_jupyter.sh
-RUN python3 -m pip install numpy
-RUN chown -R ${NB_USER}:staff ${VIRTUAL_ENV} && chmod -R g+rw ${VIRTUAL_ENV}
+USER root
+RUN curl -L https://ollama.com/download/ollama-linux-amd64.tgz -o ollama-linux-amd64.tgz && tar -C /usr -xzf ollama-linux-amd64.tgz
 
-RUN /rocker_scripts/experimental/install_dev_osgeo.sh
-RUN chown -R ${NB_USER}:staff ${VIRTUAL_ENV} && chmod -R g+rw ${VIRTUAL_ENV}
+RUN curl -fsSL https://code-server.dev/install.sh | sh && rm -rf .cache
+RUN git config --system pull.rebase false && \
+    echo '"\e[5~": history-search-backward' >> /etc/inputrc && \
+    echo '"\e[6~": history-search-forward' >> /etc/inputrc
+
+#git config --system credential.helper 'cache --timeout=30000' && \
 
-COPY apt.txt apt.txt
-RUN apt-get update -qq && xargs sudo apt-get -y install < apt.txt
+RUN apt-get update -qq && apt-get -y install vim git-lfs
 
 # install codeserver
 RUN curl -fsSL https://code-server.dev/install.sh | sh && rm -rf .cache
-#RUN wget https://github.com/coder/code-server/releases/download/v4.89.1/code-server_4.89.1_amd64.deb && dpkg -i code-server*.deb && rm code-server*.deb
 
 # ollama
 RUN curl -L https://ollama.com/download/ollama-linux-amd64.tgz -o ollama-linux-amd64.tgz && tar -C /usr -xzf ollama-linux-amd64.tgz
 
-
-# some preferences
-RUN git config --system pull.rebase false && \
-    git config --system credential.helper 'cache --timeout=30000' && \
-    echo '"\e[5~": history-search-backward' >> /etc/inputrc && \
-    echo '"\e[6~": history-search-forward' >> /etc/inputrc
-
 USER ${NB_USER}
-WORKDIR /home/${NB_USER}
-
-RUN usermod -s /bin/bash ${NB_USER}
-COPY spatial-requirements.txt /tmp/spatial-requirements.txt
-RUN python3 -m pip install --no-cache-dir -r /tmp/spatial-requirements.txt
-COPY rl-requirements.txt /tmp/rl-requirements.txt
-RUN python3 -m pip install --no-cache-dir -r /tmp/rl-requirements.txt
-COPY jupyter-requirements.txt /tmp/jupyter-requirements.txt
-RUN python3 -m pip install --no-cache-dir -r /tmp/jupyter-requirements.txt
-
-## Register the environment with ipykernel, mostly for vscode to find it
-RUN python3 -m ipykernel install --user --name=venv
+COPY spatial-env.yml spatial-env.yml
+RUN conda update -n base -c conda-forge conda && \
+    conda env update --file spatial-env.yml
 
+COPY rl-env.yml rl-env.yml
+RUN conda update -n base -c conda-forge conda && \
+    conda env update --file rl-env.yml
 
-#USER root 
-#COPY install.R /tmp/install.R
-#RUN Rscript /tmp/install.R && rm /tmp/install.R && chown -R ${NB_USER}:staff ${R_HOME}/site-library 
-#USER ${NB_USER}
 
 

images/jupyter-ai.yml

@@ -2,12 +2,14 @@ name: base
 channels:
   - conda-forge
 dependencies:
+  - ibis-duckdb
   - jupyterlab-myst
   - jupyter-ai
   - jupyter-resource-usage
   - jupyter-vscode-proxy
   - pypdf
   - pip
+  - seaborn
   - pip:
     - jupyter-tensorboard-proxy
 

images/rl-env.yml

@@ -0,0 +1,20 @@
+name: base 
+channels:
+  - conda-forge
+dependencies:
+  - darts
+  - gymnasium
+  - gputil
+  - huggingface_hub
+  - nox
+  - nvitop
+  - plotnine
+  - PyYaml
+  - pytest
+  - stable-baselines3
+  - sb3-contrib
+  - scikit-optimize
+  - pip:
+    - ray[rllib,tune]
+    - huggingface_sb3
+

images/spatial-env.yml

@@ -0,0 +1,38 @@
+name: base 
+channels:
+  - conda-forge
+dependencies:
+  - awscliv2
+  - distributed
+  - earthaccess
+  - fiona
+  - fsspec
+  - geopandas
+  - geocube
+  - leafmap[maplibregl]
+  - localtileserver
+  - mapclassify
+  - maplibre
+  - minio
+  - netCDF4
+  - odc-geo
+  - odc-stac
+  - planetary-computer
+  - pmtiles
+  - polars
+  - pyarrow
+  - pydeck
+  - pyogrio
+  - pystac
+  - pystac-client
+  - rasterio
+  - rasterstats
+  - requests
+  - rio-cogeo
+  - rioxarray
+  - stackstac
+  - streamlit
+  - tqdm
+  - xarray
+  - zarr
+