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1. Borealis-BioModeling/aurora-pkpd Borealis-BioModeling/aurora-pkpd Public

   Open Python Web App for Pharmcological Modeling and Analysis

   Python

2. pysb-pkpd pysb-pkpd Public

   PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.

   Jupyter Notebook 3 4

3. GAlibrate GAlibrate Public

   Parameter estimation and model calibration using Genetic Algorithm optimization in Python.

   Jupyter Notebook 12 3

4. NTBEL/diffusion-fit NTBEL/diffusion-fit Public

   Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.

   Python

5. LoLab-MSM/Gleipnir LoLab-MSM/Gleipnir Public

   Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling

   Python 3 2

6. LoLab-MSM/PyBILT LoLab-MSM/PyBILT Public

   Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

   Python 24 10