Scheduled Tests #1399
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| name: Scheduled Tests | |
| on: | |
| workflow_dispatch: # Manual trigger | |
| schedule: # Scheduled trigger | |
| - cron: "15,45 14-23,0-1 * * 1-5" # At minutes 15 and 45 past every hour from 14:00 through 01:00 on every day-of-week from Monday through Friday. | |
| - cron: "15 7,13 * * 1-5" # At minute 15 past hour 7 and 13 on every day-of-week from Monday through Friday. | |
| - cron: "0 14 * * 1" # At 14:00 on Monday (once a week). Any changes made here should also be reflected in the step titled "Force weekly run to bypass the version check". | |
| jobs: | |
| run_app_tests: | |
| runs-on: ubuntu-latest | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} # AWS Access Key ID. | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} # AWS Secret Access Key. | |
| AWS_DEFAULT_REGION: ${{ secrets.AWS_REGION }} # AWS Default Region. | |
| AWS_S3_BUCKET: "biothings-codebuild" # The S3 bucket name for storing application metadata. | |
| SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }} # The Slack webhook URL for sending notifications. | |
| SLACK_CHANNEL: "#logger---web" # The Slack channel where notifications will be posted. | |
| APPLICATION_NAME: "myvariant.info" # The name of the application being tested. It will be displayed in the Slack message. | |
| APPLICATION_METADATA_URL: "https://myvariant.info/metadata" # Path to the application metadata, typically a URL. | |
| APPLICATION_METADATA_FIELD: "build_date" # Notation to the build version field. Ex.: "metadata.build_version" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ "3.12" ] | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Prepare virtual environment and dependences | |
| run: | | |
| python -m venv .venv | |
| source .venv/bin/activate | |
| pip install --upgrade pip | |
| # pip install -r requirements_web.txt | |
| # TODO: Remove after fixing 1.0.x for test_001_curie_id_annotation_endpoint_GET | |
| pip install git+https://github.com/biothings/[email protected] | |
| git clone https://github.com/biothings/biothings_client.py.git | |
| cd biothings_client.py | |
| pip install . | |
| cd .. | |
| pip install .venv/lib/python${{ matrix.python-version }}/site-packages/biothings/tests/slack_test_notification | |
| - name: Force weekly run to bypass the version check | |
| if: github.event.schedule == '0 14 * * 1' | |
| run: echo "BYPASS_VERSION_CHECK=True" >> $GITHUB_ENV | |
| - name: Run pytest | |
| run: | | |
| source .venv/bin/activate | |
| python -m pytest src/tests/data biothings_client.py/tests/test_variant.py -s -vv | |
| # ### For debugging purposes in case of github action failure | |
| # ### Reference:https://github.com/mxschmitt/action-tmate | |
| # - name: Setup tmate debug session on failure | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 |