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fix: 🔨 fix expected type routing, NDE guides added
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@marcodarko
marcodarko committed Dec 23, 2023
1 parent 0dc93a7 commit 8b8e3a6
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Showing 13 changed files with 287 additions and 95 deletions.
9 changes: 9 additions & 0 deletions nuxt-app/assets/css/styles.css
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Original file line number Diff line number Diff line change
Expand Up @@ -50,6 +50,15 @@
max-width: 200px;
}

.inputbox{
border-bottom: 1px #e1e1e1 solid;
transition: all .5s;
}

.inputbox:hover{
background-color: white;
}

@media (prefers-color-scheme: dark) {
:root {
--color-background: var(--vt-c-black);
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2 changes: 1 addition & 1 deletion nuxt-app/components/JS_DefinitionBox.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -244,7 +244,7 @@ export default {
let children = self.info["vocabulary"]["children_of"].toString();
let url =
`https://www.ebi.ac.uk/ols/api/search?q=` +
`https://www.ebi.ac.uk/ols4/api/search?q=` +
query +
"&ontology=" +
ontologies +
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14 changes: 3 additions & 11 deletions nuxt-app/components/QueryBox.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -129,11 +129,11 @@
<td>
<small class="mainTextDark bold">Expected Type: </small>
<template v-for="(type, i) in item.range">
<RouterLink :to="getLink(type)">
<a v-for="link in getLink(type)" :href="link" :key="link">
<small>
<span v-html="type"></span>
</small>
</RouterLink>
</a>
<span v-if="i !== item.range.length - 1">, </span>
</template>
</td>
Expand Down Expand Up @@ -245,15 +245,7 @@ export default {
return link;
} catch (e) {
if (qName.includes(":")) {
let arr = qName.split(":");
return ["./" + arr[arr.length - 1]];
} else {
return false;
}
} finally {
if (qName.includes(":")) {
let arr = qName.split(":");
return ["./" + arr[arr.length - 1]];
return ["/ns/" + qName.split(":")[0] + "/" + qName];
} else {
return false;
}
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4 changes: 2 additions & 2 deletions nuxt-app/components/global/AnyOf.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -142,7 +142,7 @@ export default {
let children = self.option["vocabulary"]["children_of"].toString();
let url =
`https://www.ebi.ac.uk/ols/api/search?q=` +
`https://www.ebi.ac.uk/ols4/api/search?q=` +
query +
"&ontology=" +
ontologies +
Expand Down Expand Up @@ -217,7 +217,7 @@ export default {
if (ontologies) {
let url =
`https://www.ebi.ac.uk/ols/api/search?q=` +
`https://www.ebi.ac.uk/ols4/api/search?q=` +
query +
"&ontology=" +
ontologies +
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4 changes: 2 additions & 2 deletions nuxt-app/components/global/OneOf.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -141,7 +141,7 @@ export default {
let children = self.option["vocabulary"]["children_of"].toString();
let url =
`https://www.ebi.ac.uk/ols/api/search?q=` +
`https://www.ebi.ac.uk/ols4/api/search?q=` +
query +
"&ontology=" +
ontologies +
Expand Down Expand Up @@ -216,7 +216,7 @@ export default {
if (ontologies) {
let url =
`https://www.ebi.ac.uk/ols/api/search?q=` +
`https://www.ebi.ac.uk/ols4/api/search?q=` +
query +
"&ontology=" +
ontologies +
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158 changes: 140 additions & 18 deletions nuxt-app/components/global/TypeSelector.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -18,11 +18,11 @@
]"
>
<h6 class="m-0" v-if="!isChild">
<font-awesome-icon icon="fas fa-plus"></font-awesome-icon>
<font-awesome-icon icon="fas fa-plus" class="mr-1"></font-awesome-icon>
<span v-text="name"></span>
</h6>
<h6 class="m-0" v-else>
<font-awesome-icon icon="fas fa-plus"></font-awesome-icon>
<font-awesome-icon icon="fas fa-plus" class="mr-1"></font-awesome-icon>
<span v-text="name"></span>
</h6>
</div>
Expand All @@ -41,7 +41,7 @@
@submit.prevent="handleSubmit(name, value)"
>
<template v-if="type_selected == name">
<div class="col-sm-12 py-2">
<div class="col-sm-12 py-2" v-if="!value?.type == 'string'">
<template v-if="!isChild">
<small class="text-muted m-2"
><font-awesome-icon
Expand All @@ -60,7 +60,48 @@
</template>
</div>
<!-- 🤩 CLASS TYPE IF NOT ENUM OR VOCAB🤩-->
<!-- SIMPLE VALUES -->
<div v-if="value?.type == 'string' && !value.vocabulary && !value.enum">
<template v-if="value?.type == 'string'">
<div
class="bg-light p-4 text-light align-items-center"
:class="[isChild ? 'col-sm-12' : 'col-sm-12']"
>
<div class="w-100">
<form
id="keywords_form"
class="w-100 d-flex justify-content-center"
@submit.prevent="addKeyword"
>
<input
class="form-control"
type="text"
v-model="keyword_input"
/>
<button
type="button"
class="btn btn-sm btn-primary form-label"
@click="addKeyword"
>
Add <span v-if="value?.format == 'uri'">URL</span><span v-else>Text</span>
</button>
</form>
</div>
<div class="alert alert-success m-3 w-100" v-show="keywords.size">
<span
v-for="(text, i) in [...keywords]"
class="badge badge-sm badge-success pointer"
>
<small v-html="text"></small>
</span>
</div>
</div>
</template>
</div>
<!-- COMPLEX VALUES -->
<div v-else>
<!-- 🤩 CLASS TYPE IF NOT ENUM OR VOCAB🤩-->
<div
class="col-sm-12 mainBackLight text-light p-1 text-center classTab"
v-if="value && !value.vocabulary && !value.enum"
Expand Down Expand Up @@ -151,7 +192,7 @@
<b v-if="value && value.required">
<font-awesome-icon
icon="fas fa-circle"
class="text-info"
class="text-info mr-1"
:class="[
isRequired(value.required, propName)
? 'text-danger'
Expand Down Expand Up @@ -249,7 +290,7 @@
type="number"
@input="updateObject(propName, $event)"
/>
</div>
</div>
</template>
<!-- 🌼 BOOLEAN 🌼 -->
<template v-else-if="propInfo && propInfo.type == 'boolean'">
Expand Down Expand Up @@ -318,11 +359,12 @@
</template>
<!-- 🥶🥶🥶 LAST RESORT NO TYPE 🥶🥶🥶-->
<template v-else>
<small v-text="propInfo"></small>
<!-- <small v-text="propInfo"></small> -->
</template>
</template>
</div>
</div>
<!-- 🍏 SUBMIT IF NOT ENUM OR VOCAB🍏-->
<div
class="col-sm-12 p-0 mt-2"
Expand All @@ -339,6 +381,8 @@
Add <span v-text="isChild ? childName : name"></span>
</button>
</div>
</div>
<!-- END COMPLEX VALUES -->
</template>
</form>
</div>
Expand Down Expand Up @@ -368,7 +412,7 @@ export default {
Vocabulary,
},
methods: {
parseOptions() {
findTypesAvailable() {
var self = this;
// get options from oneOf or anyOf
self.info && self.info.oneOf
Expand Down Expand Up @@ -398,9 +442,18 @@ export default {
} else if (option && option["type"] == "array") {
let name = self.main_name.split("_").join(" ");
if (!self.parsed_options.hasOwnProperty(name)) {
option["keywords"] = true;
self.parsed_options[name] = option;
if (option?.items) {
//keywords are complex objects
option["keywords"] = false;
self.parsed_options[name] = option.items;
}else{
// keywords are simple strings
option["keywords"] = true;
self.parsed_options[name] = option;
}
}
}else{
console.log('Option unhandled from: ' + this.main_name, option)
}
}
} else if (
Expand All @@ -411,25 +464,86 @@ export default {
) {
// OBJECT TYPE FIELD
self.parsed_options[self.info["@type"]] = self.info;
}else{
console.log('@type not found for child node, using Thing as default: ', self.childName)
// use @type Thing as default
self.parsed_options['Thing'] = self.info;
}
// console.log(self.main_name, self.parsed_options)
console.log('%c RESULTS FOR ' + self.main_name, 'background-color:yellow')
console.log({...self.parsed_options})
// self.checkAutoSelect();
},
isRequired(requiredList, name) {
return requiredList.includes(name) ? true : false;
},
isNumeric(value) {
return /^-?\d+$/.test(value);
},
updateObject(prop, event) {
var self = this;
self.userObject[prop] = event.target.value;
// ratingVAlue from NDE is string
if (this.isNumeric(event.target.value) && prop !== 'ratingValue') {
self.userObject[prop] = parseInt(event.target.value);
} else {
self.userObject[prop] = event.target.value;
}
},
updateParent(childValue) {
var self = this;
// console.log(self.userObject)
// console.log(childValue.subfield)
// console.log('INFO', self.info)
let mustBeArray = false;
if (self.info?.oneOf) {
self.info.oneOf.forEach(option => {
if (option?.items?.properties) {
for (const key in option?.items?.properties) {
if (Object.hasOwnProperty.call(option?.items?.properties, key)) {
//if found child in prop info properties
if (key == childValue?.subfield && option?.items?.properties[key]?.oneOf) {
option?.items?.properties[key]?.oneOf.forEach(subOp => {
if (subOp?.['type'] == 'array' && subOp?.items) {
//look through child items for matched type
if (Array.isArray(subOp?.items)) {
console.log('Items are an array', subOp?.items)
subOp?.items?.forEach(item => {
if (item?.['@type'] == childValue?.value?.["@type"]) {
//confirmed
console.log('updating parent', childValue)
console.log('%c Child value must be array: ' + childValue?.subfield, 'color: orange')
mustBeArray = true;
}
})
}else if(typeof subOp?.items == 'object'){
console.log('Items are an object', subOp?.items)
if ('@type' in subOp?.items && subOp?.items?.['@type'] == childValue?.value?.["@type"]) {
//confirmed
console.log('updating parent', childValue)
console.log('%c Child value must be array: ' + childValue?.subfield, 'color: orange')
mustBeArray = true;
}else{
console.log('oh no', subOp?.items.constructor)
}
}
}
})
}
}
}
}
})
}
if (self.userObject && self.userObject[childValue.subfield]) {
let existing_val = [self.userObject[childValue.subfield]];
existing_val.push(childValue.value);
self.userObject[childValue.subfield] = existing_val;
} else {
self.userObject[childValue.subfield] = childValue.value;
if (mustBeArray) {
self.userObject[childValue.subfield] = [childValue.value];
} else {
self.userObject[childValue.subfield] = childValue.value;
}
}
},
select(name) {
Expand Down Expand Up @@ -473,7 +587,7 @@ export default {
let ontologies = propInfo["vocabulary"]["ontology"].toString();
let children = propInfo["vocabulary"]["children_of"].toString();
let url =
`https://www.ebi.ac.uk/ols/api/search?q=${query}` +
`https://www.ebi.ac.uk/ols4/api/search?q=${query}` +
"&ontology=" +
ontologies +
"&childrenOf=" +
Expand Down Expand Up @@ -544,6 +658,9 @@ export default {
var payload = {};
payload["item"] = res;
payload["from"] = self.main_name;
if (self.info?.oneOf?.length == 1 && self.info?.oneOf?.[0]?.type == 'array') {
payload["forceArray"] = true;
}
this.$store.commit("addToArrayFrom", payload);
this.$store.dispatch("saveProgress");
}
Expand Down Expand Up @@ -603,11 +720,16 @@ export default {
// CHILD
self.$emit("update", { value: data, subfield: self.childName });
self.type_selected = "";
self.$store.dispatch("saveProgress");
} else {
// PARENT
var payload = {};
payload["item"] = data;
payload["from"] = self.main_name;
if (self.info?.oneOf?.length == 1 && self.info?.oneOf?.[0]?.type == 'array') {
payload["forceArray"] = true;
}
// console.log('PAYLOAD', payload)
this.$store.commit("addToArrayFrom", payload);
this.$store.dispatch("saveProgress");
//reset
Expand Down Expand Up @@ -636,10 +758,8 @@ export default {
let self = this;
if (self.requirementsFulfilled(fieldInfo)) {
if (!self.isChild) {
console.log(1)
self.animatedSubmit(ClassType, fieldInfo);
} else {
console.log(2)
self.regularSubmit(ClassType, fieldInfo);
}
} else {
Expand Down Expand Up @@ -719,6 +839,9 @@ export default {
var payload = {};
payload["item"] = result.value[i];
payload["from"] = propName;
if (self.info?.oneOf?.length == 1 && self.info?.oneOf?.[0]?.type == 'array') {
payload["forceArray"] = true;
}
this.$store.commit("addToArrayFrom", payload);
this.$store.dispatch("saveProgress");
Expand All @@ -745,8 +868,7 @@ export default {
},
},
mounted: function () {
// console.log('TYPE SELECTOR : ' + this.main_name, this.info)
this.parseOptions();
this.findTypesAvailable();
},
};
</script>
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