Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[DO NOT MERGE] Distance metric #104

Open
wants to merge 4 commits into
base: master
Choose a base branch
from
Open

[DO NOT MERGE] Distance metric #104

wants to merge 4 commits into from

Conversation

yunfeiguo
Copy link
Contributor

  • RES-552
  • Blocking PRs: ADD HERE IF ANY
  • Release note (if needed)
  • No code copied from outside Bina
  • Tests (Unit, Workflow, ITL & Gherkin) are passing
  • PR labels, milestones & assignees

Summary

  • added -output_distance_metric for distance-based metrics
  • (in implementation) global matching of true variants and test variants to minimize overall mismatches (or maximize overall quality of pairing)
  • maintain backward compatibility without the distance metric option
  • introduced jgrapht package for finding max-weighted matching

@yunfeiguo yunfeiguo self-assigned this Feb 12, 2017
@yunfeiguo yunfeiguo requested a review from marghoob February 12, 2017 07:14
Yunfei Guo added 2 commits February 12, 2017 10:37
@yunfeiguo yunfeiguo changed the base branch from master to indel_mapping February 16, 2017 00:37
@yunfeiguo yunfeiguo changed the base branch from indel_mapping to master February 16, 2017 00:37
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@marghoob marghoob Awaiting requested review from marghoob

Assignees

@yunfeiguo yunfeiguo

Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@yunfeiguo