Modify all CWL READMEs #2
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| on: | |
| push: | |
| paths: | |
| - common/cwl/README.md | |
| workflow_dispatch: | |
| name: CWL README | |
| jobs: | |
| sync: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: bioexcel/biobb_workflows | |
| path: ./ | |
| - name: Copy README files | |
| run: | | |
| cp common/cwl/README.md biobb_wf_amber_abc_setup/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_amber_md_setup/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_amber_md_setup_lig/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_flexdyn/cwl/README.md | |
| sed -i '13a> **IMPORTANT!** The Concoord software doesn't work with dockers on Mac ARM, so in case you are using this type of computer, please comment the steps 4 to 7 as indicated in both **workflow.cwl** and **workflow_input_descriptions.yml** files.' biobb_wf_flexdyn/cwl/README.md | |
| sed -i '14a\\' biobb_wf_flexdyn/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_flexserv/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_godmd/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_ligand_parameterization/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_md_setup/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_md_setup_mutations/cwl/README.mdd | |
| cp common/cwl/README.md biobb_wf_protein-complex_md_setup/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_structure_checking/cwl/README.md | |
| cp common/cwl/README.md biobb_wf_virtual-screening_fpocket/cwl/README.md | |
| - name: Commit and push changes | |
| run: | | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| git add */cwl/README.md && git commit -m "Updated CWL README" && git push |