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pjotrp committed Aug 16, 2023
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3 changes: 3 additions & 0 deletions .github/workflows/ci.yaml
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Expand Up @@ -21,6 +21,9 @@ jobs:
ARCH=$(uname -m)
wget --quiet https://github.com/ldc-developers/ldc/releases/download/v${LDC_VERSION}/ldc2-${LDC_VERSION}-linux-${ARCH}.tar.xz
tar xf ldc2-${LDC_VERSION}-linux-${ARCH}.tar.xz
ls -ld
ls -l
cwd
echo "ldc2-${LDC_VERSION}-linux-${ARCH}/bin" >> $GITHUB_PATH
- name: Build & test
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2 changes: 1 addition & 1 deletion README.md
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[![Build Status](https://travis-ci.org/biod/sambamba.svg?branch=master)](https://travis-ci.org/biod/sambamba) [![AnacondaBadge](https://anaconda.org/bioconda/sambamba/badges/installer/conda.svg)](https://anaconda.org/bioconda/sambamba) [![DL](https://anaconda.org/bioconda/sambamba/badges/downloads.svg)](https://anaconda.org/bioconda/sambamba) [![BrewBadge](https://img.shields.io/badge/%F0%9F%8D%BAbrew-sambamba-brightgreen.svg)](https://github.com/brewsci/homebrew-bio) [![GuixBadge](https://img.shields.io/badge/gnuguix-sambamba-brightgreen.svg)](https://www.gnu.org/software/guix/packages/S/) [![DebianBadge](https://badges.debian.net/badges/debian/testing/sambamba/version.svg)](https://packages.debian.org/testing/sambamba)
[![Build Status](https://travis-ci.org/biod/sambamba.svg?branch=master)](https://travis-ci.org/biod/sambamba) [![DL](https://anaconda.org/bioconda/sambamba/badges/downloads.svg)](https://anaconda.org/bioconda/sambamba) [![BrewBadge](https://img.shields.io/badge/%F0%9F%8D%BAbrew-sambamba-brightgreen.svg)](https://github.com/brewsci/homebrew-bio) [![GuixBadge](https://img.shields.io/badge/gnuguix-sambamba-brightgreen.svg)](https://packages.guix.gnu.org/packages/sambamba/) [![DebianBadge](https://badges.debian.net/badges/debian/testing/sambamba/version.svg)](https://packages.debian.org/testing/sambamba)

A. Tarasov, A. J. Vilella, E. Cuppen, I. J. Nijman, and P. Prins. [Sambamba: fast processing of NGS alignment formats](https://doi.org/10.1093/bioinformatics/btv098). Bioinformatics, 2015.

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3 changes: 2 additions & 1 deletion RELEASE-NOTES.md
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## ChangeLog v1.0.1
## ChangeLog v1.0.1 (20230815)

+ Fixed the build for recent ldc2 compilers by using a recent msgpack
+ Ran benchmarks and optimized meson build

## ChangeLog v1.0.0 (20230119)

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