Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

move low quality genomes from input directory to output directory (fo… #11

Open
wants to merge 3 commits into
base: master
Choose a base branch
from

Conversation

ekopylova
Copy link
Collaborator

…r phylogenetic tree building)

@ekopylova
Copy link
Collaborator Author

@wasade could you take a quick look? Works well on my end.

filename = basename(line[fna_idx])
if filename not in genomes:
genomes.append(filename)
return genomes
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

can genomes be cast to a set? its subsequent use on line 61 appear to be for a lookup

@wasade
Copy link
Member

wasade commented Nov 2, 2016

One quick minor comment, then 👍

@ekopylova
Copy link
Collaborator Author

@wasade change made, thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants