fix linting

micov/_utils.py

@@ -1,12 +1,14 @@
 import logging
 
+
 def configure_logging():
     logger = logging.getLogger("micov")
     logger.setLevel(logging.INFO)
-    # Check if the logger already has handlers (prevents adding multiple handlers)
     if not logger.hasHandlers():
         handler = logging.StreamHandler()
-        formatter = logging.Formatter("%(asctime)s - %(name)s - %(levelname)s: %(message)s")
+        formatter = logging.Formatter(
+            "%(asctime)s - %(name)s - %(levelname)s: %(message)s"
+        )
         handler.setFormatter(formatter)
         logger.addHandler(handler)
-    return logger
+    return logger

micov/cli.py

@@ -109,8 +109,8 @@ def compress(data, output, disable_compression, lengths, taxonomy):
             taxonomy = parse_taxonomy(taxonomy)
 
     if os.path.isdir(data):
-        file_list = (glob(data + "/*.sam") 
-                    + glob(data + '/*.sam.xz') 
+        file_list = (glob(data + "/*.sam")
+                    + glob(data + '/*.sam.xz')
                     + glob(data + '/*.sam.gz'))
     else:
         file_list = [data]