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Add ctyper to conda #53303

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Add ctyper to conda #53303

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d635ad3
Initial submission of ctyper to conda
mchaisso Jan 18, 2025
9d7f176
Fixed package name
mchaisso Jan 18, 2025
f048cb2
Reset build number
mchaisso Jan 18, 2025
7f3e0c2
Moved name to ctyper in pin_subpackage
mchaisso Jan 18, 2025
2b0d100
Checking if Ctyper instead of ctyper builds.
mchaisso Jan 18, 2025
c921252
Renamed folder
mchaisso Jan 18, 2025
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14 changes: 14 additions & 0 deletions recipes/Ctyper/build.sh
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Original file line number Diff line number Diff line change
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#!/bin/bash

set -xe

mkdir -p $PREFIX/bin

export CFLAGS="$CFLAGS -I$PREFIX/include"
export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
export CPATH=${PREFIX}/include
export EIGEN_ROOT=${CONDA_PREFIX}
cd src && make -j ${CPU_COUNT} CC="${CC} ${CFLAGS} ${CPPFLAGS} ${LDFLAGS} -fPIE " CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS} -fPIE" && cd ..

cp src/ctyper $PREFIX/bin

48 changes: 48 additions & 0 deletions recipes/Ctyper/meta.yaml
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{% set version = "1.0" %}

package:
name: Ctyper
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Suggested change
name: Ctyper
name: ctyper

version: {{ version }}

source:
url: https://github.com/ChaissonLab/Ctyper/archive/refs/tags/v{{version}}.tar.gz
sha256: 55ea1f5a46149e5c5da1e1c2ebe4159a175d8af649ee579174fe97e8da4b91c0
patches:
- ctyper-aarch64.patch # [linux and aarch64]

build:
number: 0
run_exports:
- {{ pin_subpackage('Ctyper', max_pin='x.x') }}
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Suggested change
- {{ pin_subpackage('Ctyper', max_pin='x.x') }}
- {{ pin_subpackage('ctyper', max_pin='x.x') }}


requirements:
build:
- make
- {{ compiler('c') }}
- {{ compiler('cxx') }}
- zlib 1.2.*
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Suggested change
- zlib 1.2.*


host:
- zlib
- htslib
- boost
- zlib 1.2.*
- eigen
run:
- htslib
- zlib 1.2.*
- eigen

test:
commands:
- ctyper | grep 'Usage'

about:
home: https://github.com/ChaissonLab/Ctyper
license: USC-RL v1.0
license_file: LICENSE.txt
summary: 'Genotyping sequence-resolved copy-number variation using pangenomes'

extra:
additional-platforms:
- linux-aarch64
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