Modifying pom.xml files for Spark 3, Scala 2.12 release.

bigdatagenomics · Jun 21, 2020 · 942fc70 · 942fc70
1 parent 400ab9b
commit 942fc70
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Showing 8 changed files with 38 additions and 38 deletions.
diff --git a/pom.xml b/pom.xml
@@ -9,7 +9,7 @@
 
   <modelVersion>4.0.0</modelVersion>
   <groupId>org.bdgenomics.utils</groupId>
-  <artifactId>utils-parent-spark2_2.11</artifactId>
+  <artifactId>utils-parent-spark3_2.12</artifactId>
   <version>0.3.0-SNAPSHOT</version>
   <packaging>pom</packaging>
   <name>utils</name>
@@ -18,9 +18,9 @@
 
   <properties>
     <java.version>1.8</java.version>
-    <scala.version>2.11.12</scala.version>
-    <scala.version.prefix>2.11</scala.version.prefix>
-    <spark.version>2.4.6</spark.version>
+    <scala.version>2.12.8</scala.version>
+    <scala.version.prefix>2.12</scala.version.prefix>
+    <spark.version>3.0.0</spark.version>
     <parquet.version>1.10.1</parquet.version>
     <!-- Edit the following line to configure the Hadoop (HDFS) version. -->
     <hadoop.version>2.7.5</hadoop.version>
@@ -293,19 +293,19 @@
       </dependency>
       <dependency>
         <groupId>org.bdgenomics.utils</groupId>
-        <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+        <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
         <version>${project.version}</version>
       </dependency>
       <dependency>
         <groupId>org.bdgenomics.utils</groupId>
-        <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+        <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
         <version>${project.version}</version>
         <scope>test</scope>
         <type>test-jar</type>
       </dependency>
       <dependency>
         <groupId>org.bdgenomics.utils</groupId>
-        <artifactId>utils-io-spark2_${scala.version.prefix}</artifactId>
+        <artifactId>utils-io-spark3_${scala.version.prefix}</artifactId>
         <version>${project.version}</version>
       </dependency>
       <dependency>

diff --git a/utils-cli/pom.xml b/utils-cli/pom.xml
@@ -3,14 +3,14 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <groupId>org.bdgenomics.utils</groupId>
-    <artifactId>utils-parent-spark2_2.11</artifactId>
+    <artifactId>utils-parent-spark3_2.12</artifactId>
     <version>0.3.0-SNAPSHOT</version>
     <relativePath>../pom.xml</relativePath>
   </parent>
 
-  <artifactId>utils-cli-spark2_2.11</artifactId>
+  <artifactId>utils-cli-spark3_2.12</artifactId>
   <packaging>jar</packaging>
-  <name>utils-cli-spark2_2.11: utilities for building command line applications</name>
+  <name>utils-cli-spark3_2.12: utilities for building command line applications</name>
   <build>
     <plugins>
       <!-- disable surefire -->
@@ -74,7 +74,7 @@
     </dependency>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
     </dependency>
     <dependency>
       <groupId>org.scala-lang</groupId>

diff --git a/utils-intervalrdd/pom.xml b/utils-intervalrdd/pom.xml
@@ -3,13 +3,13 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <groupId>org.bdgenomics.utils</groupId>
-    <artifactId>utils-parent-spark2_2.11</artifactId>
+    <artifactId>utils-parent-spark3_2.12</artifactId>
     <version>0.3.0-SNAPSHOT</version>
     <relativePath>../pom.xml</relativePath>
   </parent>
-  <artifactId>utils-intervalrdd-spark2_2.11</artifactId>
+  <artifactId>utils-intervalrdd-spark3_2.12</artifactId>
   <packaging>jar</packaging>
-  <name>utils-intervalrdd-spark2_2.11: IntervalRDD based on interval tree</name>
+  <name>utils-intervalrdd-spark3_2.12: IntervalRDD based on interval tree</name>
   <build>
     <plugins>
       <!-- disable surefire -->
@@ -89,13 +89,13 @@
   <dependencies>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
       <scope>test</scope>
       <type>test-jar</type>
     </dependency>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
     </dependency>
     <dependency>
       <groupId>org.apache.spark</groupId>

diff --git a/utils-io/pom.xml b/utils-io/pom.xml
@@ -3,13 +3,13 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <groupId>org.bdgenomics.utils</groupId>
-    <artifactId>utils-parent-spark2_2.11</artifactId>
+    <artifactId>utils-parent-spark3_2.12</artifactId>
     <version>0.3.0-SNAPSHOT</version>
     <relativePath>../pom.xml</relativePath>
   </parent>
-  <artifactId>utils-io-spark2_2.11</artifactId>
+  <artifactId>utils-io-spark3_2.12</artifactId>
   <packaging>jar</packaging>
-  <name>utils-io-spark2_2.11: I/O utils</name>
+  <name>utils-io-spark3_2.12: I/O utils</name>
   <build>
     <plugins>
       <!-- disable surefire -->
@@ -90,11 +90,11 @@
   <dependencies>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
     </dependency>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
       <scope>test</scope>
       <type>test-jar</type>
     </dependency>

diff --git a/utils-minhash/pom.xml b/utils-minhash/pom.xml
@@ -3,13 +3,13 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <groupId>org.bdgenomics.utils</groupId>
-    <artifactId>utils-parent-spark2_2.11</artifactId>
+    <artifactId>utils-parent-spark3_2.12</artifactId>
     <version>0.3.0-SNAPSHOT</version>
     <relativePath>../pom.xml</relativePath>
   </parent>
-  <artifactId>utils-minhash-spark2_2.11</artifactId>
+  <artifactId>utils-minhash-spark3_2.12</artifactId>
   <packaging>jar</packaging>
-  <name>utils-minhash-spark2_2.11: MinHash-based Jaccard similarity estimator</name>
+  <name>utils-minhash-spark3_2.12: MinHash-based Jaccard similarity estimator</name>
   <build>
     <plugins>
       <!-- disable surefire -->
@@ -90,13 +90,13 @@
   <dependencies>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
       <scope>test</scope>
       <type>test-jar</type>
     </dependency>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
     </dependency>
     <dependency>
       <groupId>org.scala-lang</groupId>

diff --git a/utils-misc/pom.xml b/utils-misc/pom.xml
@@ -3,13 +3,13 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <groupId>org.bdgenomics.utils</groupId>
-    <artifactId>utils-parent-spark2_2.11</artifactId>
+    <artifactId>utils-parent-spark3_2.12</artifactId>
     <version>0.3.0-SNAPSHOT</version>
     <relativePath>../pom.xml</relativePath>
   </parent>
-  <artifactId>utils-misc-spark2_2.11</artifactId>
+  <artifactId>utils-misc-spark3_2.12</artifactId>
   <packaging>jar</packaging>
-  <name>utils-misc-spark2_2.11: Miscellaneous Spark utility code</name>
+  <name>utils-misc-spark3_2.12: Miscellaneous Spark utility code</name>
   <build>
     <plugins>
       <!-- disable surefire -->

diff --git a/utils-serialization/pom.xml b/utils-serialization/pom.xml
@@ -3,13 +3,13 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <groupId>org.bdgenomics.utils</groupId>
-    <artifactId>utils-parent-spark2_2.11</artifactId>
+    <artifactId>utils-parent-spark3_2.12</artifactId>
     <version>0.3.0-SNAPSHOT</version>
     <relativePath>../pom.xml</relativePath>
   </parent>
-  <artifactId>utils-serialization-spark2_2.11</artifactId>
+  <artifactId>utils-serialization-spark3_2.12</artifactId>
   <packaging>jar</packaging>
-  <name>utils-serialization-spark2_2.11: tools for serializing data</name>
+  <name>utils-serialization-spark3_2.12: tools for serializing data</name>
   <build>
     <plugins>
       <!-- disable surefire -->
@@ -90,7 +90,7 @@
   <dependencies>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
       <scope>test</scope>
       <type>test-jar</type>
     </dependency>

diff --git a/utils-statistics/pom.xml b/utils-statistics/pom.xml
@@ -3,13 +3,13 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <groupId>org.bdgenomics.utils</groupId>
-    <artifactId>utils-parent-spark2_2.11</artifactId>
+    <artifactId>utils-parent-spark3_2.12</artifactId>
     <version>0.3.0-SNAPSHOT</version>
     <relativePath>../pom.xml</relativePath>
   </parent>
-  <artifactId>utils-statistics-spark2_2.11</artifactId>
+  <artifactId>utils-statistics-spark3_2.12</artifactId>
   <packaging>jar</packaging>
-  <name>utils-statistics-spark2_2.11: Spark code for fitting statistical models</name>
+  <name>utils-statistics-spark3_2.12: Spark code for fitting statistical models</name>
   <build>
     <plugins>
       <!-- disable surefire -->
@@ -102,13 +102,13 @@
     </dependency>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
       <scope>test</scope>
       <type>test-jar</type>
     </dependency>
     <dependency>
       <groupId>org.bdgenomics.utils</groupId>
-      <artifactId>utils-misc-spark2_${scala.version.prefix}</artifactId>
+      <artifactId>utils-misc-spark3_${scala.version.prefix}</artifactId>
     </dependency>
     <dependency>
       <groupId>org.apache.spark</groupId>