Feat CI Pipeline #26
Workflow file for this run
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| name: Code Checking | |
| on: | |
| push: | |
| paths: | |
| - '**/*.py' | |
| pull_request: | |
| branches: | |
| - master | |
| env: | |
| singularity_image: oras://ghcr.io/berenslab/retinal-rl:singularity-image-latest | |
| sif_file: retinal-rl_singularity-image-latest.sif | |
| jobs: | |
| check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Fetch all branches | |
| run: git fetch --all | |
| - name: Setup Apptainer | |
| uses: eWaterCycle/setup-apptainer@v2 | |
| with: | |
| apptainer-version: 1.3.0 | |
| - name: Cache Singularity Image | |
| id: cache-singularity | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.sif_file }} | |
| key: ${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }} | |
| restore-keys: | | |
| ${{ runner.os }}-singularity- | |
| - name: Pull Singularity container | |
| if: steps.cache-singularity.outputs.cache-hit != 'true' | |
| run: | | |
| singularity registry login --username ${{ github.actor }} --password ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io | |
| singularity pull ${{ env.sif_file }} ${{ env.singularity_image }} | |
| - name: Run Pylint | |
| run: | | |
| singularity exec ${{ env.sif_file }} \ | |
| pylint $(git diff --name-only origin/master...HEAD -- '*.py') |