fix: screw reusable actions, hopefully it runs now #18
Workflow file for this run
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name: Code Checking | |
on: | |
push: | |
# paths: | |
# - '**/*.py' | |
pull_request: | |
branches: | |
- main | |
env: | |
singularity_image: oras://ghcr.io/berenslab/retinal-rl:singularity-image-latest | |
sif_file: retinal-rl_singularity-image-latest.sif | |
jobs: | |
check: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Setup Apptainer | |
uses: eWaterCycle/setup-apptainer@v2 | |
with: | |
apptainer-version: 1.3.0 | |
- name: Cache Singularity Image | |
id: cache-singularity | |
uses: actions/cache@v3 | |
with: | |
path: ~/${{ env.sif_file }} | |
key: ${{ runner.os }}-singularity-${{ hashFiles('~/resources/retinal-rl.def') }} | |
- name: Pull Singularity container | |
if: steps.cache-singularity.outputs.cache-hit != 'true' | |
run: | | |
singularity registry login --username ${{ github.actor }} --password ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io | |
singularity pull ${{ env.sif_file }} ${{ env.singularity_image }} | |
- name: Checkout code | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Fetch all branches | |
run: git fetch --all | |
- name: Run Pylint | |
run: | | |
singularity exec ~/singularity_images/retinal-rl_singularity-image-latest.sif \ | |
pylint $(git diff --name-only origin/master...HEAD -- '*.py') |