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Cloning refactor and data race fix #393

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merged 16 commits into from
Nov 15, 2023
Merged

Cloning refactor and data race fix #393

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ea89331
enzyme manager to avoid managing global state over the lifetime of a …
TwFlem Nov 4, 2023
3700cbb
clone_test -> clone to make it easier to test and bench
TwFlem Nov 4, 2023
db1f25a
remove concurrency
TwFlem Nov 4, 2023
2933f12
remove todos
TwFlem Nov 4, 2023
7a733c7
expose some enzymes
TwFlem Nov 4, 2023
3941e24
fix lint
TwFlem Nov 5, 2023
d8c803a
update changelog and remove pointer reciever.
TwFlem Nov 5, 2023
bda46d6
moved example test to separate file for namespace clarity in rendered…
TimothyStiles Nov 11, 2023
a241f1d
renaming variables.
TimothyStiles Nov 11, 2023
99ed49c
renamed variables and added comments.
TimothyStiles Nov 11, 2023
b7b6f02
more variables and comments
TimothyStiles Nov 11, 2023
de9226d
renamed variables and removed unnecessary control block.
TimothyStiles Nov 11, 2023
69819b3
added struct field ranme to changelog.
TimothyStiles Nov 11, 2023
9e8f947
Golden Gate is no longer a receiver
TwFlem Nov 14, 2023
7fe5871
update changelog
TwFlem Nov 14, 2023
3f8932a
renamed enzyme manager variable.
TimothyStiles Nov 15, 2023
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9 changes: 8 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -14,9 +14,16 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Fixed
- `fastq` parser no longer becomes de-aligned when reading (#325)
- `fastq` now handles optionals correctly (#323)
- No more data race in GoldenGate (#276)

### Breaking
- CutWithEnzymeByName is now a receiver of EnzymeManager. GoldenGate now takes an Enzyme instead of the name of an enzyme.
This is an effort to remove dependence on some package level global state and build some flexibility managing enzymes
over the lifetime of the program.
- Enzyme.OverhangLen is now named Enzyme.OverhangLength

## [0.26.0] - 2023-07-22
Oops, we weren't keeping a changelog before this tag!

[unreleased]: https://github.com/TimothyStiles/poly/compare/v0.26.0...main
[0.26.0]: https://github.com/TimothyStiles/poly/releases/tag/v0.26.0
[0.26.0]: https://github.com/TimothyStiles/poly/releases/tag/v0.26.0
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