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breseq v0.37.0

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@jeffreybarrick jeffreybarrick released this 18 May 11:27
· 99 commits to master since this release
  • Warns that breseq results can vary (usually only slightly) with different bowtie2 versions and recommends a specific version for consistency.
  • Added back code for shifting indels to improve mutation calling.
  • Added an option for gdtools APPLY to output a new GD file showing the positions of each mutation in the (mutated) output genome.
  • Updated documentation related to installation and explaining junction orientations.
  • Fixed crash that could occur if there was a deletion spanning the origin of a circular reference sequence.